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生活在临时池塘中承载巨大基因组:新热带一年生鳉属作为杰出的新进化模型

Living in Temporary Ponds Loading Giant Genomes: The Neotropical Annual Killifish Genus as New Outstanding Evolutionary Model.

作者信息

García Graciela, Gutiérrez Verónica, Ríos Néstor

机构信息

Sección Genética Evolutiva, Facultad de Ciencias, UdelaR, Montevideo, Uruguay.

出版信息

Front Genet. 2022 Jun 20;13:903683. doi: 10.3389/fgene.2022.903683. eCollection 2022.

DOI:10.3389/fgene.2022.903683
PMID:35795213
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9251178/
Abstract

The term Annual killifish describes a short-lived and amazing group of vertebrates inhabiting temporary ponds exposed to an extremely variable environment during its short lifespan in South America and Africa, leading to the death of the entire adult population during the dry season. is a specious genus of the family Rivulidae, with ∼58 currently recognized species, extensively distributed in the temperate Neotropical region. Herein, we reviewed different aspects of the evolutionary biology with emphasis on the genome dynamic linked to the burst speciation process in this genus. constitutes an excellent model to study the genomic evolutionary processes underlying speciation events, since all the species of this genus analyzed so far share an unusually large genome size, with an average DNA content of 5.95 ± 0.45 picograms per diploid cell (mean C-value of about 2.98 pg). The drastic nuclear DNA-increasing would be associated with a considerable proportion of transposable elements (TEs) found in the genomes. The genomic proportion of the moderately repetitive DNA in the genome represents approximately twice (45%) the amount of the repetitive components of the highly related sympatric and syntopic rivulinae taxon (25%), as well as from other rivulids and actinopterygian fish. These events could explain the great genome instability, the high genetic diversity, chromosome variability, as well as the morphological diversity in species of . Thus, species of this genus represent new model systems linking different evolutionary processes: drastic genome increase, massive TEs genomic representation, high chromosome instability, occurrence of natural hybridization between sister species, and burst speciation events.

摘要

“一年生鳉鱼”一词描述了一类寿命短暂却令人称奇的脊椎动物,它们栖息于南美洲和非洲的临时性池塘中,在其短暂的生命周期里,所处环境极端多变,这导致整个成年种群在旱季死亡。[该属名未给出具体中文名称]是鳉科的一个似是而非的属,目前已识别出约58个物种,广泛分布于新热带区温带地区。在此,我们回顾了进化生物学的不同方面,重点关注与该属爆发式物种形成过程相关的基因组动态。[该属名未给出具体中文名称]构成了一个研究物种形成事件背后基因组进化过程的绝佳模型,因为到目前为止分析的该属所有物种都共享异常大的基因组大小,每个二倍体细胞的平均DNA含量为5.95±0.45皮克(平均C值约为2.98皮克)。核DNA的急剧增加与在[该属名未给出具体中文名称]基因组中发现的相当比例的转座元件(TEs)有关。[该属名未给出具体中文名称]基因组中中度重复DNA的基因组比例约为高度相关的同域和同地的鳉亚科分类群[该分类群名未给出具体中文名称](25%)以及其他鳉科鱼类和辐鳍鱼类重复成分数量的两倍(45%)。这些事件可以解释[该属名未给出具体中文名称]物种中巨大的基因组不稳定性、高遗传多样性、染色体变异性以及形态多样性。因此,该属物种代表了连接不同进化过程的新模型系统:基因组急剧增加、大量TEs的基因组呈现、高染色体不稳定性、姐妹物种间自然杂交的发生以及爆发式物种形成事件。

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本文引用的文献

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Genome of the Rio Pearlfish (Nematolebias whitei), a bi-annual killifish model for Eco-Evo-Devo in extreme environments.里约珍珠鱼(Nematolebias whitei)基因组,一种在极端环境下进行生态进化发育研究的双年度卵生小鱼模式生物。
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Genome sequencing and transcriptomic analysis of the Andean killifish Orestias ascotanensis reveals adaptation to high-altitude aquatic life.对安第斯鳉鱼奥雷斯蒂亚斯·阿斯科塔南西斯的基因组测序和转录组分析揭示了其对高海拔水生生活的适应性。
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Fermentation innovation through complex hybridization of wild and domesticated yeasts.
通过野生和驯化酵母的复杂杂交进行发酵创新。
Nat Ecol Evol. 2019 Nov;3(11):1576-1586. doi: 10.1038/s41559-019-0998-8. Epub 2019 Oct 21.
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Transcriptome-Based SNP Discovery and Validation in the Hybrid Zone of the Neotropical Annual Fish Genus .基于转录组的 SNP 发现与验证在新热带一年生鱼类属的杂交区
Genes (Basel). 2019 Oct 11;10(10):789. doi: 10.3390/genes10100789.
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The Future of Gene-Guided Neuroscience Research in Non-Traditional Model Organisms.非传统模式生物中基因导向神经科学研究的未来
Brain Behav Evol. 2019;93(2-3):108-121. doi: 10.1159/000500072. Epub 2019 Aug 15.
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, an 'instant' fish from an ephemeral habitat., 一种来自短暂栖息地的“即时”鱼类。
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Osteological analysis of the killifish genus Cynolebias (Cyprinodontiformes: Rivulidae).鳉属鱼类(鲤齿目:溪鳉科)的骨骼学分析
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The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development.小口白甲鱼的基因组为研究脊椎动物的极端环境耐受和胚胎发育提供了线索。
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Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids.转座元件调控异常与果蝇杂交种中亲代piRNA通路之间的差异有关。
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Non-model model organisms.非模式模式生物
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