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计算方法在肿瘤学药物再利用中的应用:对现有证据进行范围综述的方案。

In silico approaches for drug repurposing in oncology: Protocol for a scoping review of existing evidence.

机构信息

Gonçalo Moniz Institute, Oswaldo Cruz Foundation (IGM-FIOCRUZ/BA), Salvador, Brazil.

Department of Pathology and Forensic Medicine, School of Medicine, Federal University of Bahia, Salvador, Brazil.

出版信息

PLoS One. 2022 Jul 7;17(7):e0271002. doi: 10.1371/journal.pone.0271002. eCollection 2022.

DOI:10.1371/journal.pone.0271002
PMID:35797386
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9262171/
Abstract

Drug repurposing has been applied in the biomedical field to optimize the use of existing drugs, leading to a more efficient allocation of research resources. In oncology, this approach is particularly interesting, considering the high cost related to the discovery of new drugs with therapeutic potential. Computational methods have been applied to predict associations between drugs and their targets. However, drug repurposing has not always been promising and its efficiency has yet to be proven. Therefore, the present scoping review protocol was developed to screen the literature on how in silico strategies can be implemented in drug repurposing in oncology. The scoping review will be conducted according to the Arksey and O'Malley framework (2005) and the Joanna Briggs Institute recommendations. We will search the PubMed/MEDLINE, Embase, Scopus, and Web of Science databases, as well as the grey literature. We will include peer-reviewed research articles involving in silico strategies applied to drug repurposing in oncology, published between January 1, 2003, and December 31, 2021. Data will be charted and findings described according to review questions. We will report the scoping review using the Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Review guidelines (PRISMA-ScR).

摘要

药物重定位已应用于生物医学领域,以优化现有药物的使用,从而更有效地分配研究资源。在肿瘤学领域,这种方法尤其有趣,因为与发现具有治疗潜力的新药相关的成本很高。已经应用计算方法来预测药物与其靶点之间的关联。然而,药物重定位并不总是有希望的,其效率还有待证明。因此,制定了本范围综述方案,以筛选关于计算策略如何在肿瘤学中的药物重定位中实施的文献。范围综述将根据 Arksey 和 O'Malley 框架(2005 年)和 Joanna Briggs 研究所的建议进行。我们将搜索 PubMed/MEDLINE、Embase、Scopus 和 Web of Science 数据库以及灰色文献。我们将包括涉及在肿瘤学中应用于药物重定位的计算策略的同行评审研究文章,发表时间为 2003 年 1 月 1 日至 2021 年 12 月 31 日。将根据审查问题对数据进行图表绘制和结果描述。我们将使用系统评价和荟萃分析扩展的首选报告项目(PRISMA-ScR)报告范围综述。

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In silico approaches for drug repurposing in oncology: Protocol for a scoping review of existing evidence.计算方法在肿瘤学药物再利用中的应用:对现有证据进行范围综述的方案。
PLoS One. 2022 Jul 7;17(7):e0271002. doi: 10.1371/journal.pone.0271002. eCollection 2022.
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引用本文的文献

1
approaches for drug repurposing in oncology: a scoping review.肿瘤学中药物重新利用的方法:一项范围综述
Front Pharmacol. 2024 Jun 11;15:1400029. doi: 10.3389/fphar.2024.1400029. eCollection 2024.
2
In Silico Approaches to Polyherbal Synergy: Protocol for a Scoping Review.基于计算机的多草药协同作用研究方法:方案设计型综述研究方案。
JMIR Res Protoc. 2024 Jun 10;13:e56646. doi: 10.2196/56646.
3
Use of Three-Dimensional Cell Culture Models in Drug Assays for Anti-Cancer Agents in Oral Cancer: Protocol for a Scoping Review.三维细胞培养模型在口腔癌抗癌药物检测中的应用:一项范围综述方案
J Pers Med. 2023 Nov 17;13(11):1618. doi: 10.3390/jpm13111618.

本文引用的文献

1
A contemporary review on the important role of approaches for managing different aspects of COVID-19 crisis.一篇关于应对新冠疫情危机不同方面的方法所起重要作用的当代综述。
Inform Med Unlocked. 2022;28:100862. doi: 10.1016/j.imu.2022.100862. Epub 2022 Jan 21.
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Estimated Research and Development Investment Needed to Bring a New Medicine to Market, 2009-2018.2009-2018 年新药推向市场所需的研发投资估算。
JAMA. 2020 Mar 3;323(9):844-853. doi: 10.1001/jama.2020.1166.
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Drug repurposing: progress, challenges and recommendations.药物重定位:进展、挑战和建议。
Nat Rev Drug Discov. 2019 Jan;18(1):41-58. doi: 10.1038/nrd.2018.168. Epub 2018 Oct 12.
4
Review of Drug Repositioning Approaches and Resources.药物重定位方法和资源综述。
Int J Biol Sci. 2018 Jul 13;14(10):1232-1244. doi: 10.7150/ijbs.24612. eCollection 2018.
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Guidance for conducting systematic scoping reviews.进行系统范围综述的指南。
Int J Evid Based Healthc. 2015 Sep;13(3):141-6. doi: 10.1097/XEB.0000000000000050.
6
Protein localization vector propagation: a method for improving the accuracy of drug repositioning.蛋白质定位载体传播:一种提高药物重新定位准确性的方法。
Mol Biosyst. 2015 Jul;11(7):2096-102. doi: 10.1039/c5mb00306g.
7
Preferred reporting items for systematic review and meta-analysis protocols (PRISMA-P) 2015 statement.系统评价与Meta分析方案的首选报告项目(PRISMA-P)2015声明。
Syst Rev. 2015 Jan 1;4(1):1. doi: 10.1186/2046-4053-4-1.
8
Drug repositioning: identifying and developing new uses for existing drugs.药物重新定位:识别并开发现有药物的新用途。
Nat Rev Drug Discov. 2004 Aug;3(8):673-83. doi: 10.1038/nrd1468.