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双-(吗啉乙酰胺基)钯(II)配合物的生物活性:制备、结构解析、细胞毒性、DNA-/血清白蛋白相互作用、密度泛函理论、计算预测和分子模拟。

Biological activity of bis-(morpholineacetato)palladium(II) complex: Preparation, structural elucidation, cytotoxicity, DNA-/serum albumin-interaction, density functional theory, in-silico prediction and molecular modeling.

机构信息

Department of Chemistry, University of Sistan and Baluchestan, Zahedan, Iran.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2022 Nov 15;281:121543. doi: 10.1016/j.saa.2022.121543. Epub 2022 Jun 27.

DOI:10.1016/j.saa.2022.121543
PMID:35797947
Abstract

In an effort to discover a novel potential bioactive compound, a mono-nuclear Pd(II) complex with an amino acid derivative as ligand was synthesized and characterized through experimental and computational methodologies. A square-planar configuration was suggested for palladium(II) complex utilizing density functional theory. MEP map and Mulliken atomic charge were detected electrophilic and nucleophilic regions of the compound for reactions. The lipophilicity and cytotoxic activity of the complex was more effective than cisplatin. Also, OSIRIS DataWarrior revealed proper oral bioavailability and good drug-likeness for the compound. In-vitro binding behavior of the Pd(II) complex with DNA and serum albumin (BSA) were fully determined via variety of procedures including fluorescence, UV-Vis, CD, viscosity, gel electrophoresis experiments and molecular simulation. The negative signs of ΔH° and ΔS° for Pd(II) complex-CT-DNA/-BSA systems indicated the existence of hydrogen bonding/van der Waals interactions for both binding systems. Additionally, docking simulation illustrated the interaction of Pd(II) complex with the minor groove of DNA and the hydrophobic cavity of the BSA (drug binding site I).

摘要

为了发现一种新型潜在的生物活性化合物,我们通过实验和计算方法合成并表征了一种单核 Pd(II) 配合物,其配体为氨基酸衍生物。利用密度泛函理论,我们提出了钯(II)配合物的正方形平面构型。MEP 图和 Mulliken 原子电荷检测到化合物的亲电和亲核区域,以便进行反应。该配合物的脂溶性和细胞毒性活性均优于顺铂。此外,OSIRIS DataWarrior 揭示了该化合物具有适当的口服生物利用度和良好的类药性。通过包括荧光、紫外-可见、CD、粘度、凝胶电泳实验和分子模拟在内的多种程序,全面研究了 Pd(II) 配合物与 DNA 和血清白蛋白 (BSA) 的体外结合行为。对于 Pd(II) 配合物-CT-DNA/-BSA 系统,ΔH°和ΔS°的负号表明两个结合系统中存在氢键/范德华相互作用。此外,对接模拟说明了 Pd(II) 配合物与 DNA 小沟和 BSA(药物结合位点 I)疏水性腔的相互作用。

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