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甲基化调控的差异表达基因UBE2C在泛癌中的表达及作用分析,尤其针对高级别浆液性卵巢癌

The Expression and Role Analysis of Methylation-Regulated Differentially Expressed Gene UBE2C in Pan-Cancer, Especially for HGSOC.

作者信息

Li Jiajia, Sun Yating, Zhi Xiuling, Li Qin, Yao Liangqing, Chen Mo

机构信息

Department of Gynecology Oncology, Obstetrics & Gynecology Hospital, Fudan University, Shanghai 200011, China.

Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Fudan University, Shanghai 200032, China.

出版信息

Cancers (Basel). 2022 Jun 25;14(13):3121. doi: 10.3390/cancers14133121.

Abstract

High-grade serous ovarian cancer (HGSOC) is the most fatal gynecological malignant tumor. DNA methylation is associated with the occurrence and development of a variety of tumor types, including HGSOC. However, the signatures regarding DNA methylation changes for HGSOC diagnosis and prognosis are less explored. Here, we screened differentially methylated genes and differentially expressed genes in HGSOC through the GEO database. We identified that UBE2C was hypomethylation and overexpression in ovarian cancer, which was associated with more advanced cancer stages and poor prognoses. Additionally, the pan-cancer analysis showed that UBE2C was overexpressed and hypomethylation in almost all cancer types and was related to poor prognoses for various cancers. Next, we established a risk or prognosis model related to UBE2C methylation sites and screened out the three sites (cg03969725, cg02838589, and cg00242976). Furthermore, we experimentally validated the overexpression of UBE2C in HGSOC clinical samples and ovarian cell lines using quantitative real-time PCR, Western blot, and immunohistochemistry. Importantly, we discovered that ovarian cancer cell lines had lower DNA methylation levels of UBE2C than IOSE-80 cells (normal ovarian epithelial cell line) by bisulfite sequencing PCR. Consistently, treatment with 5-Azacytidine (a methylation inhibitor) was able to restore the expression of UBE2C. Taken together, our study may help us to understand the underlying molecular mechanism of UBE2C in pan-cancer tumorigenesis; it may be a useful biomarker for diagnosis, treatment, and monitoring, not only of ovarian cancer but a variety of cancers.

摘要

高级别浆液性卵巢癌(HGSOC)是最致命的妇科恶性肿瘤。DNA甲基化与包括HGSOC在内的多种肿瘤类型的发生和发展相关。然而,关于HGSOC诊断和预后的DNA甲基化变化特征的研究较少。在此,我们通过GEO数据库筛选了HGSOC中的差异甲基化基因和差异表达基因。我们发现UBE2C在卵巢癌中存在低甲基化和过表达,这与更晚期的癌症阶段和不良预后相关。此外,泛癌分析表明,UBE2C在几乎所有癌症类型中均过表达且低甲基化,并且与各种癌症的不良预后相关。接下来,我们建立了与UBE2C甲基化位点相关的风险或预后模型,并筛选出三个位点(cg03969725、cg02838589和cg00242976)。此外,我们使用定量实时PCR、蛋白质免疫印迹和免疫组织化学实验验证了UBE2C在HGSOC临床样本和卵巢细胞系中的过表达。重要的是,我们通过亚硫酸氢盐测序PCR发现,卵巢癌细胞系中UBE2C的DNA甲基化水平低于IOSE - 80细胞(正常卵巢上皮细胞系)。一致地,用5 - 氮杂胞苷(一种甲基化抑制剂)处理能够恢复UBE2C的表达。综上所述,我们的研究可能有助于我们了解UBE2C在泛癌肿瘤发生中的潜在分子机制;它可能是一种不仅对卵巢癌而且对多种癌症的诊断、治疗和监测有用的生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b559/9264902/71952cb3683b/cancers-14-03121-g001.jpg

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