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植物病原体自然种群的遗传分析

Genetic Analysis of Plant Pathogens Natural Populations.

作者信息

Sillo Fabiano

机构信息

National Research Council, Institute for Sustainable Plant Protection, (CNR-IPSP), Torino, Italy.

出版信息

Methods Mol Biol. 2022;2536:405-422. doi: 10.1007/978-1-0716-2517-0_23.

DOI:10.1007/978-1-0716-2517-0_23
PMID:35819617
Abstract

Population genetics allow to address fundamental questions about the biology of plant pathogens. By testing specific hypotheses, population genetics provide insights into the population genetic variability of pathogens across different geographical areas, time, and associated plant hosts, as well as on the structure and differentiation of populations, and on the possibility that a population is introduced and from where it has originated. In this chapter, basic concepts of population genetics are introduced, as well as the five evolutionary factors affecting populations, that is, mutations, recombination, variation in population size, gene flow, and natural selection. A step-by-step workflow, from sampling to data analysis, on how to perform a genetic analysis of natural populations of plant pathogens is discussed. Increased knowledge of the population biology of pathogens is pivotal to improve management strategies of diseases in agricultural and forest ecosystems.

摘要

群体遗传学有助于解决有关植物病原体生物学的基本问题。通过检验特定假设,群体遗传学能够深入了解病原体在不同地理区域、时间以及相关植物宿主中的群体遗传变异性,以及群体的结构与分化情况,还有群体是否被引入及其起源地的可能性。在本章中,将介绍群体遗传学的基本概念,以及影响群体的五个进化因素,即突变、重组、群体大小变化、基因流动和自然选择。还将讨论从采样到数据分析的逐步工作流程,介绍如何对植物病原体的自然群体进行遗传分析。增加对病原体群体生物学的了解对于改进农业和森林生态系统中病害的管理策略至关重要。

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Population Genomics of Filamentous Plant Pathogens-A Brief Overview of Research Questions, Approaches, and Pitfalls.丝状植物病原菌的群体遗传学研究——研究问题、方法及陷阱的简要概述。
Phytopathology. 2021 Jan;111(1):12-22. doi: 10.1094/PHYTO-11-20-0527-FI. Epub 2020 Dec 18.
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Genetic analysis reveals long-standing population differentiation and high diversity in the rust pathogen Melampsora lini.遗传分析揭示了锈病病原菌亚麻单胞锈菌的长期种群分化和高度多样性。
PLoS Pathog. 2020 Aug 18;16(8):e1008731. doi: 10.1371/journal.ppat.1008731. eCollection 2020 Aug.
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Interspecific Gene Exchange Introduces High Genetic Variability in Crop Pathogen.
种间基因交换为作物病原菌引入了高度遗传变异性。
Genome Biol Evol. 2019 Nov 1;11(11):3095-3105. doi: 10.1093/gbe/evz224.
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Population Biology of Plant Pathogens: The Synthesis of Plant Disease Epidemiology and Population Genetics.植物病原体的种群生物学:植物病害流行病学与种群遗传学的综合
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An Overview of the Function and Maintenance of Sexual Reproduction in Dikaryotic Fungi.双核真菌有性生殖的功能与维持概述
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Epidemiological and Evolutionary Outcomes in Gene-for-Gene and Matching Allele Models.基因对基因模型和匹配等位基因模型中的流行病学与进化结果。
Front Plant Sci. 2016 Jan 7;6:1084. doi: 10.3389/fpls.2015.01084. eCollection 2015.
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Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction.Poppr:用于具有克隆、部分克隆和/或有性繁殖的群体遗传分析的 R 包。
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