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无创产前检测中胎儿游离DNA比例的计算

Calculation of Fetal Fraction for Non-Invasive Prenatal Testing.

作者信息

Cserhati Matthew

机构信息

Independent Researcher, 2615C Muscatel Ave., Rosemead, CA 91770, USA.

出版信息

BioTech (Basel). 2021 Aug 9;10(3):17. doi: 10.3390/biotech10030017.

DOI:10.3390/biotech10030017
PMID:35822771
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9245487/
Abstract

Estimating the fetal fraction of DNA in a pregnant mother's blood is a risk-free, non-invasive way of predicting fetal aneuploidy. It is a rapidly developing field of study, offering researchers a plethora of different complementary methods. Such methods include examining the differences in methylation profiles between the fetus and the mother. Others include calculating the average allele frequency based on the difference in genotype of a number of single-nucleotide polymorphisms. Differences in the length distribution of DNA fragments between the mother and the fetus as well as measuring the proportion of DNA reads mapping to the Y chromosome also constitute fetal fraction estimation methods. The advantages and disadvantages of each of these main method types are discussed. Moreover, several well-known fetal fraction estimation methods, such as SeqFF, are described and compared with other methods. These methods are amenable to not only the estimation of fetal fraction but also paternity, cancer, and transplantation monitoring studies. NIPT is safe, and should aneuploidy be detected, this information can help parents prepare mentally and emotionally for the birth of a special needs child.

摘要

估算孕妇血液中胎儿DNA的比例是一种无风险、非侵入性的预测胎儿非整倍体的方法。这是一个快速发展的研究领域,为研究人员提供了大量不同的互补方法。这些方法包括检查胎儿与母亲之间甲基化谱的差异。其他方法包括根据多个单核苷酸多态性的基因型差异计算平均等位基因频率。母亲与胎儿之间DNA片段长度分布的差异以及测量映射到Y染色体的DNA读数比例也构成了胎儿比例估算方法。本文讨论了每种主要方法类型的优缺点。此外,还描述了几种著名的胎儿比例估算方法,如SeqFF,并与其他方法进行了比较。这些方法不仅适用于胎儿比例的估算,也适用于亲子鉴定、癌症和移植监测研究。无创产前检测是安全的,如果检测到非整倍体,这些信息可以帮助父母在心理和情感上为有特殊需求的孩子的出生做好准备。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcc0/9245487/17f37b60026d/biotech-10-00017-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcc0/9245487/13f0e3b82e95/biotech-10-00017-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcc0/9245487/3f147be981ba/biotech-10-00017-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcc0/9245487/17f37b60026d/biotech-10-00017-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcc0/9245487/13f0e3b82e95/biotech-10-00017-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcc0/9245487/3f147be981ba/biotech-10-00017-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcc0/9245487/17f37b60026d/biotech-10-00017-g003.jpg

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1
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引用本文的文献

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Preeclampsia risk prediction from prenatal cell-free DNA screening.基于产前游离DNA筛查的子痫前期风险预测
Nat Med. 2025 Apr;31(4):1312-1318. doi: 10.1038/s41591-025-03509-w. Epub 2025 Feb 12.
2
Performance evaluation of noninvasive prenatal testing on 24 chromosomes in a cohort of 118,969 pregnant women in Sichuan, China.中国四川118969名孕妇队列中24种染色体无创产前检测的性能评估
J Int Med Res. 2024 Sep;52(9):3000605241274584. doi: 10.1177/03000605241274584.

本文引用的文献

1
Total number of reads affects the accuracy of fetal fraction estimates in NIPT.总的reads 数量会影响 NIPT 中胎儿分数估计的准确性。
Mol Genet Genomic Med. 2021 Apr;9(4):e1653. doi: 10.1002/mgg3.1653. Epub 2021 Mar 9.
2
An online tool for fetal fraction prediction based on direct size distribution analysis of maternal cell-free DNA.基于母体游离 DNA 直接大小分布分析的胎儿分数预测在线工具。
Biotechniques. 2021 Feb;70(2):81-88. doi: 10.2144/btn-2020-0143. Epub 2020 Nov 30.
3
Identification of fetal unmodified and 5-hydroxymethylated CG sites in maternal cell-free DNA for non-invasive prenatal testing.
鉴定母体游离 DNA 中未修饰和 5-羟甲基化 CG 位点,用于无创性产前检测。
Clin Epigenetics. 2020 Oct 20;12(1):153. doi: 10.1186/s13148-020-00938-x.
4
International Society for Prenatal Diagnosis Position Statement: cell free (cf)DNA screening for Down syndrome in multiple pregnancies.国际产前诊断学会立场声明:多胎妊娠中游离(cf)DNA筛查唐氏综合征
Prenat Diagn. 2021 Sep;41(10):1222-1232. doi: 10.1002/pd.5832. Epub 2020 Nov 15.
5
Non-invasive prenatal testing in the context of IVF and PGT-A.体外受精和 PGT-A 背景下的无创性产前检测。
Best Pract Res Clin Obstet Gynaecol. 2021 Jan;70:51-62. doi: 10.1016/j.bpobgyn.2020.07.004. Epub 2020 Jul 15.
6
Why NIPT should be publicly funded.为什么 NIPT 应该被公共资助。
J Med Ethics. 2020 Nov;46(11):783-784. doi: 10.1136/medethics-2020-106218. Epub 2020 Apr 10.
7
Precise genomic mapping of 5-hydroxymethylcytosine via covalent tether-directed sequencing.通过共价连接导向测序对 5-羟甲基胞嘧啶进行精确的基因组作图。
PLoS Biol. 2020 Apr 10;18(4):e3000684. doi: 10.1371/journal.pbio.3000684. eCollection 2020 Apr.
8
Causes of aberrant non-invasive prenatal testing for aneuploidy: A systematic review.非侵入性产前唐氏筛查检测异常的原因:系统评价。
Taiwan J Obstet Gynecol. 2020 Jan;59(1):16-20. doi: 10.1016/j.tjog.2019.11.003.
9
Development of a new methylation-based fetal fraction estimation assay using multiplex ddPCR.利用多重数字 PCR 开发新型基于甲基化的胎儿分数估计测定法。
Mol Genet Genomic Med. 2020 Feb;8(2):e1094. doi: 10.1002/mgg3.1094. Epub 2019 Dec 10.
10
Noninvasive prenatal paternity testing by means of SNP-based targeted sequencing.基于 SNP 的靶向测序的无创性产前亲子鉴定。
Prenat Diagn. 2020 Mar;40(4):497-506. doi: 10.1002/pd.5595. Epub 2020 Feb 20.