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合成生物学的生态防火墙

Ecological firewalls for synthetic biology.

作者信息

Vidiella Blai, Solé Ricard

机构信息

ICREA-Complex Systems Lab, Universitat Pompeu Fabra, Dr Aiguader 88, 08003 Barcelona, Spain.

Institut de Biologia Evolutiva, CSIC-UPF, Pg Maritim de la Barceloneta 37, 08003 Barcelona, Spain.

出版信息

iScience. 2022 Jun 23;25(7):104658. doi: 10.1016/j.isci.2022.104658. eCollection 2022 Jul 15.

Abstract

It has been recently suggested that engineered microbial strains could be used to protect ecosystems from undesirable tipping points and biodiversity loss. A major concern in this context is the potential unintended consequences, which are usually addressed in terms of designed genetic constructs aimed at controlling overproliferation. Here we present and discuss an alternative view grounded in the nonlinear attractor dynamics of some ecological network motifs. These ecological firewalls are designed to perform novel functionalities (such as plastic removal) while containment is achieved within the resident community. That could help provide a self-regulating biocontainment. In this way, engineered organisms have a limited spread while-when required-preventing their extinction. The basic synthetic designs and their dynamical behavior are presented, each one inspired in a given ecological class of interaction. Their possible applications are discussed and the broader connection with invasion ecology outlined.

摘要

最近有人提出,可以利用工程微生物菌株来保护生态系统,使其免受不良临界点和生物多样性丧失的影响。在这种情况下,一个主要问题是潜在的意外后果,通常通过旨在控制过度增殖的设计基因构建体来解决。在此,我们提出并讨论一种基于某些生态网络基序的非线性吸引子动力学的不同观点。这些生态防火墙旨在执行新功能(如塑料去除),同时在本地群落内实现遏制。这有助于提供一种自我调节的生物遏制。通过这种方式,工程生物在需要时防止其灭绝的同时,传播范围有限。本文介绍了基本的合成设计及其动力学行为,每一种都受到特定生态相互作用类别的启发。讨论了它们可能的应用,并概述了与入侵生态学更广泛的联系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/976f/9272386/da5a8921bc7d/fx1.jpg

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