Institut de Biologia Evolutiva (CSIC-UPF), 08003 Barcelona, Spain.
ICREA-Complex Systems Lab, Universitat Pompeu Fabra, 08003 Barcelona, Spain.
ACS Synth Biol. 2021 Feb 19;10(2):277-285. doi: 10.1021/acssynbio.0c00318. Epub 2021 Jan 15.
Multicellular entities are characterized by intricate spatial patterns, intimately related to the functions they perform. These patterns are often created from isotropic embryonic structures, without external information cues guiding the symmetry breaking process. Mature biological structures also display characteristic scales with repeating distributions of signals or chemical species across space. Many candidate patterning modules have been used to explain processes during development and typically include a set of interacting and diffusing chemicals or agents known as . Great effort has been put forward to better understand the conditions in which pattern-forming processes can occur in the biological domain. However, evidence and practical knowledge allowing us to engineer symmetry-breaking is still lacking. Here we follow a different approach by designing a synthetic gene circuit in that implements a local activation long-range inhibition mechanism. The synthetic gene network implements an artificial differentiation process that changes the physicochemical properties of the agents. Using both experimental results and modeling, we show that the proposed system is capable of symmetry-breaking leading to regular spatial patterns during colony growth. Studying how these patterns emerge is fundamental to further our understanding of the evolution of biocomplexity and the role played by self-organization. The artificial system studied here and the engineering perspective on embryogenic processes can help validate developmental theories and identify universal properties underpinning biological pattern formation, with special interest for the area of synthetic developmental biology.
多细胞实体的特征是复杂的空间模式,与它们执行的功能密切相关。这些模式通常是从各向同性的胚胎结构中产生的,没有外部信息线索来指导对称破缺过程。成熟的生物结构也显示出特征性的尺度,在空间上重复分布着信号或化学物质。许多候选模式形成模块被用于解释发育过程中的过程,通常包括一组相互作用和扩散的化学物质或被称为的物质。人们付出了巨大的努力来更好地理解模式形成过程在生物领域中发生的条件。然而,允许我们进行对称破缺工程的证据和实际知识仍然缺乏。在这里,我们通过设计一个在 中实现局部激活远程抑制机制的合成基因电路来采用不同的方法。合成基因网络实现了一种人工分化过程,改变了物质的物理化学性质。通过实验结果和建模,我们表明,所提出的系统能够打破对称,导致在菌落生长过程中出现规则的空间模式。研究这些模式是如何出现的,对于进一步理解生物复杂性的进化以及自组织所起的作用至关重要。这里研究的人工系统和对胚胎发生过程的工程视角可以帮助验证发育理论,并确定支持生物模式形成的普遍特性,对合成发育生物学领域特别感兴趣。