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肺腺癌患者预后性铁死亡相关长链非编码RNA特征的鉴定与验证

Identification and verification of a prognostic ferroptosis-related lncRNAs signature for patients with lung adenocarcinoma.

作者信息

Qi Kai, Liu Xin-Liang, Chen Xiang-Lai, Song Chao, Peng Jin-Hua, Xu Jian-Jun

机构信息

Department of Cardio-Thoracic Surgery, The Second Affiliated Hospital of Nanchang University Nanchang 330008, Jiangxi, China.

出版信息

Am J Transl Res. 2022 Jun 15;14(6):3698-3715. eCollection 2022.

Abstract

Lung cancer has been identified as one of the deadliest malignant tumors worldwide. Mounting evidence suggests that ferroptosis is a well-known non-apoptotic cell death process that participates in pathological mechanisms and is a new cancer treatment strategy. Aberrantly expressed long non-coding RNAs (lncRNAs) that drive lung cancer progression have attracted increasing attention. Herein, we explored the prognostic significance of ferroptosis-related lncRNAs in lung cancer patients. LUAD gene expression patterns and clinicopathological data were downloaded from The Cancer Genome Atlas (TCGA) database. Based on LASSO-Cox regression, A 14 ferroptosis-related differentially expressed lncRNAs (FRDELs) signature was constructed. Subsequently, a nomogram model for predicting the prognosis of LUAD patients was constructed based on clinicopathological data and the 14 - FRDELs signature. The signature was shown to be correlated with tumor mutational burden (TMB) and immune cell infiltration within the tumor microenvironment. Furthermore, Gene Set Enrichment Analysis (GSEA) confirmed that the signature was correlated with LUAD-related biological functions such as the P53 signaling pathway, DNA replication, and cell cycle. The roles and mechanisms of PACERR in the signature were explored by si-lncRNA-mediated knockdown and transfection-mediated overexpression via experiments in A549 and H1299 cells. PACERR was significantly upregulated in A549 and H1299 cells, and higher expression promoted LUAD cell proliferation, migration, and invasion via experiments, while knockdown of PACERR presented the opposite effects. In conclusion, our study provided information regarding ferroptosis-related lncRNA expression and established a prognostic nomogram based on 14 FRDELs to predict overall survival in LUAD accurately. Additionally, our results revealed that PACERR played an oncogenic role in LUAD proliferation and metastasis, which provides mechanistic insights into the roles of ferroptosis-related lncRNA in LUAD progression and that it may be a potential biomarker for LUAD treatment.

摘要

肺癌已被确认为全球最致命的恶性肿瘤之一。越来越多的证据表明,铁死亡是一种众所周知的非凋亡性细胞死亡过程,参与病理机制,是一种新的癌症治疗策略。驱动肺癌进展的异常表达的长链非编码RNA(lncRNA)越来越受到关注。在此,我们探讨了铁死亡相关lncRNA在肺癌患者中的预后意义。从癌症基因组图谱(TCGA)数据库下载肺腺癌(LUAD)基因表达模式和临床病理数据。基于LASSO-Cox回归,构建了一个由14个铁死亡相关差异表达lncRNA(FRDEL)组成的特征模型。随后,基于临床病理数据和14个FRDEL特征模型构建了预测LUAD患者预后的列线图模型。该特征模型与肿瘤突变负担(TMB)和肿瘤微环境中的免疫细胞浸润相关。此外,基因集富集分析(GSEA)证实该特征模型与LUAD相关的生物学功能如P53信号通路、DNA复制和细胞周期相关。通过在A549和H1299细胞中进行小干扰RNA(si-lncRNA)介导的敲低和转染介导的过表达实验,探索了特征模型中PACERR的作用和机制。PACERR在A549和H1299细胞中显著上调,通过实验发现其高表达促进LUAD细胞增殖、迁移和侵袭,而敲低PACERR则产生相反的效果。总之,我们的研究提供了铁死亡相关lncRNA表达的信息,并基于14个FRDEL建立了一个预后列线图,以准确预测LUAD的总生存期。此外,我们的结果表明PACERR在LUAD增殖和转移中发挥致癌作用,这为铁死亡相关lncRNA在LUAD进展中的作用提供了机制性见解,并且它可能是LUAD治疗的潜在生物标志物。

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