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黑色素瘤中铜死亡相关基因在免疫浸润和预后中的综合分析

Comprehensive Analysis of Cuproptosis-Related Genes in Immune Infiltration and Prognosis in Melanoma.

作者信息

Lv Haozhen, Liu Xiao, Zeng Xuanhao, Liu Yating, Zhang Canjing, Zhang Qi, Xu Jinhua

机构信息

Department of Dermatology, Huashan Hospital, Fudan University, Shanghai, China.

Institutes of Biomedical Sciences, Fudan University, Shanghai, China.

出版信息

Front Pharmacol. 2022 Jun 28;13:930041. doi: 10.3389/fphar.2022.930041. eCollection 2022.

Abstract

Skin cutaneous melanoma (SKCM, hereafter referred to as melanoma) is the most lethal skin cancer with increasing incidence. Regulated cell death plays an important role in tumorigenesis and serves as an important target for almost all treatment strategies. Cuproptosis is the most recently identified copper-dependent regulated cell death form that relies on mitochondria respiration. However, its role in tumorigenesis remains unknown. The correlation of cuproptosis-related genes with tumor prognosis is far to be understood, either. In the present study, we explored the correlation between cuproptosis-related genes with the prognosis of melanoma by accessing and analyzing a public database and found 11 out 12 genes were upregulated in melanoma tissues and three genes (LIPT1, PDHA1, and SLC31A1) have predictive value for the prognosis. The subgroup of melanoma patients with higher cuproptosis-related gene expression showed longer overall survival than those with lower gene expression. We chose LIPT1 for further exploration. LIPT1 expression was increased in melanoma biopsies and was an independent favorable prognostic indicator for melanoma patients. Moreover, LIPT1 expression was positively correlated with PD-L1 expression and negatively associated with Treg cell infiltration. The melanoma patients with higher LIPT1 expression showed longer overall survival than those with lower LIPT1 expression after receiving immunotherapy, indicating the prognostic predictive value of LIPT1. Finally, a pan-cancer analysis indicated that LIPT1 was differentially expressed in diverse cancers as compared to normal tissues and correlated with the expression of multiple immune checkpoints, especially PD-L1. It could serve as a favorable prognosis indicator in some cancer types. In conclusion, our study demonstrated the prognostic value of cuproptosis-related genes, especially LIPT1, in melanoma, and revealed the correlation between LIPT1 expression and immune infiltration in melanoma, thus providing new clues on the prognostic assessment of melanoma patients and providing a new target for the immunotherapy of melanoma.

摘要

皮肤黑色素瘤(SKCM,以下简称黑色素瘤)是最致命的皮肤癌,发病率呈上升趋势。程序性细胞死亡在肿瘤发生中起重要作用,几乎是所有治疗策略的重要靶点。铜死亡是最近发现的一种依赖线粒体呼吸的铜依赖性程序性细胞死亡形式。然而,其在肿瘤发生中的作用尚不清楚。铜死亡相关基因与肿瘤预后的相关性也远未明确。在本研究中,我们通过访问和分析一个公共数据库,探讨了铜死亡相关基因与黑色素瘤预后之间的相关性,发现12个基因中有11个在黑色素瘤组织中上调,其中3个基因(LIPT1、PDHA1和SLC31A1)对预后具有预测价值。铜死亡相关基因表达较高的黑色素瘤患者亚组的总生存期长于基因表达较低的患者。我们选择LIPT1进行进一步研究。LIPT1在黑色素瘤活检组织中表达增加,是黑色素瘤患者独立的良好预后指标。此外,LIPT1表达与PD-L1表达呈正相关,与调节性T细胞浸润呈负相关。接受免疫治疗后,LIPT1表达较高的黑色素瘤患者的总生存期长于LIPT1表达较低的患者,表明LIPT1具有预后预测价值。最后,一项泛癌分析表明,与正常组织相比,LIPT1在多种癌症中存在差异表达,并与多个免疫检查点的表达相关,尤其是PD-L1。它在某些癌症类型中可作为良好的预后指标。总之,我们的研究证明了铜死亡相关基因,尤其是LIPT1,在黑色素瘤中的预后价值,并揭示了LIPT1表达与黑色素瘤免疫浸润之间的相关性,从而为黑色素瘤患者的预后评估提供了新线索,并为黑色素瘤的免疫治疗提供了新靶点。

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