• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使海洋图像数据 FAIR。

Making marine image data FAIR.

机构信息

GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.

National Oceanography Centre, European Way, Southampton, SO14 3ZH, UK.

出版信息

Sci Data. 2022 Jul 15;9(1):414. doi: 10.1038/s41597-022-01491-3.

DOI:10.1038/s41597-022-01491-3
PMID:35840583
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9287444/
Abstract

Underwater images are used to explore and monitor ocean habitats, generating huge datasets with unusual data characteristics that preclude traditional data management strategies. Due to the lack of universally adopted data standards, image data collected from the marine environment are increasing in heterogeneity, preventing objective comparison. The extraction of actionable information thus remains challenging, particularly for researchers not directly involved with the image data collection. Standardized formats and procedures are needed to enable sustainable image analysis and processing tools, as are solutions for image publication in long-term repositories to ascertain reuse of data. The FAIR principles (Findable, Accessible, Interoperable, Reusable) provide a framework for such data management goals. We propose the use of image FAIR Digital Objects (iFDOs) and present an infrastructure environment to create and exploit such FAIR digital objects. We show how these iFDOs can be created, validated, managed and stored, and which data associated with imagery should be curated. The goal is to reduce image management overheads while simultaneously creating visibility for image acquisition and publication efforts.

摘要

水下图像被用于探索和监测海洋栖息地,生成具有异常数据特征的大型数据集,这些特征排除了传统的数据管理策略。由于缺乏普遍采用的数据标准,从海洋环境中收集的图像数据的异质性不断增加,从而无法进行客观比较。因此,提取可操作的信息仍然具有挑战性,特别是对于那些不直接参与图像数据收集的研究人员来说。需要标准化的格式和程序,以支持可持续的图像分析和处理工具,以及用于长期存储库中图像发布的解决方案,以确保数据的重复使用。FAIR 原则(可查找、可访问、可互操作、可重用)为实现这些数据管理目标提供了一个框架。我们建议使用图像 FAIR 数字对象(iFDO),并展示了创建和利用此类 FAIR 数字对象的基础环境。我们展示了如何创建、验证、管理和存储这些 iFDO,以及应该策展与图像相关的数据。目标是在减少图像管理开销的同时,同时提高图像采集和发布工作的可见度。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e938/9287444/8db05a1081d2/41597_2022_1491_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e938/9287444/d36b105ddcd3/41597_2022_1491_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e938/9287444/4a0e9db1e882/41597_2022_1491_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e938/9287444/8db05a1081d2/41597_2022_1491_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e938/9287444/d36b105ddcd3/41597_2022_1491_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e938/9287444/4a0e9db1e882/41597_2022_1491_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e938/9287444/8db05a1081d2/41597_2022_1491_Fig3_HTML.jpg

相似文献

1
Making marine image data FAIR.使海洋图像数据 FAIR。
Sci Data. 2022 Jul 15;9(1):414. doi: 10.1038/s41597-022-01491-3.
2
Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems.在网络基础设施系统中实现可查找、可访问、可互操作和可重用的海洋宏基因组数据集的本体丰富规范。
Front Microbiol. 2021 Dec 8;12:765268. doi: 10.3389/fmicb.2021.765268. eCollection 2021.
3
Daily life in the Open Biologist's second job, as a Data Curator.开放生物学家的第二份工作——数据管理员的日常生活。
Wellcome Open Res. 2024 Dec 5;9:523. doi: 10.12688/wellcomeopenres.22899.1. eCollection 2024.
4
Initiatives, Concepts, and Implementation Practices of the Findable, Accessible, Interoperable, and Reusable Data Principles in Health Data Stewardship: Scoping Review.健康数据治理中可发现性、可访问性、互操作性和可重用性数据原则的举措、概念和实施实践:范围综述。
J Med Internet Res. 2023 Aug 28;25:e45013. doi: 10.2196/45013.
5
The Minderoo-Monaco Commission on Plastics and Human Health.美诺集团-摩纳哥基金会塑料与人体健康委员会
Ann Glob Health. 2023 Mar 21;89(1):23. doi: 10.5334/aogh.4056. eCollection 2023.
6
Making Metadata Machine-Readable as the First Step to Providing Findable, Accessible, Interoperable, and Reusable Population Health Data: Framework Development and Implementation Study.将元数据转化为机器可读形式作为提供可查找、可访问、可互操作和可重用的人群健康数据的第一步:框架开发与实施研究
Online J Public Health Inform. 2024 Aug 1;16:e56237. doi: 10.2196/56237.
7
The past, present and future of neuroscience data sharing: a perspective on the state of practices and infrastructure for FAIR.神经科学数据共享的过去、现在与未来:关于促进可获取、可互操作、可重用和可理解(FAIR)实践与基础设施状况的观点
Front Neuroinform. 2024 Jan 5;17:1276407. doi: 10.3389/fninf.2023.1276407. eCollection 2023.
8
Initiatives, Concepts, and Implementation Practices of FAIR (Findable, Accessible, Interoperable, and Reusable) Data Principles in Health Data Stewardship Practice: Protocol for a Scoping Review.健康数据管理实践中FAIR(可查找、可访问、可互操作和可重用)数据原则的倡议、概念及实施实践:一项范围综述方案
JMIR Res Protoc. 2021 Feb 2;10(2):e22505. doi: 10.2196/22505.
9
CORAL: A framework for rigorous self-validated data modeling and integrative, reproducible data analysis.珊瑚:一个用于严格自验证数据建模和集成、可重复数据分析的框架。
Gigascience. 2022 Oct 17;11. doi: 10.1093/gigascience/giac089.
10
Sharing FAIR monitoring program data improves discoverability and reuse.分享 FAIR 监测计划数据可提高可发现性和再利用性。
Environ Monit Assess. 2023 Sep 4;195(10):1141. doi: 10.1007/s10661-023-11788-4.

引用本文的文献

1
A framework for FAIR robotic datasets.一个 FAIR 机器人数据集框架。
Sci Data. 2023 Sep 13;10(1):620. doi: 10.1038/s41597-023-02495-3.
2
Long-term High Resolution Image Dataset of Antarctic Coastal Benthic Fauna.南极沿海底栖动物的长期高分辨率图像数据集。
Sci Data. 2022 Dec 3;9(1):750. doi: 10.1038/s41597-022-01865-7.

本文引用的文献

1
Introducing the FAIR Principles for research software.提出研究软件的 FAIR 原则。
Sci Data. 2022 Oct 14;9(1):622. doi: 10.1038/s41597-022-01710-x.
2
In situ observations show vertical community structure of pelagic fauna in the eastern tropical North Atlantic off Cape Verde.原地观测显示,佛得角以东热带北大西洋的远洋动物群具有垂直的群落结构。
Sci Rep. 2020 Dec 11;10(1):21798. doi: 10.1038/s41598-020-78255-9.
3
MorphoCluster: Efficient Annotation of Plankton Images by Clustering.MorphoCluster:通过聚类实现浮游生物图像的高效标注。
Sensors (Basel). 2020 May 28;20(11):3060. doi: 10.3390/s20113060.
4
Ecology of a polymetallic nodule occurrence gradient: Implications for deep-sea mining.多金属结核赋存梯度的生态学:对深海采矿的启示。
Limnol Oceanogr. 2019 Sep;64(5):1883-1894. doi: 10.1002/lno.11157. Epub 2019 Mar 13.
5
MAIA-A machine learning assisted image annotation method for environmental monitoring and exploration.MAIA-一种用于环境监测和探索的机器学习辅助图像标注方法。
PLoS One. 2018 Nov 16;13(11):e0207498. doi: 10.1371/journal.pone.0207498. eCollection 2018.
6
An acquisition, curation and management workflow for sustainable, terabyte-scale marine image analysis.可持续的、兆字节级别的海洋图像分析的获取、策展和管理工作流程。
Sci Data. 2018 Aug 28;5:180181. doi: 10.1038/sdata.2018.181.
7
Compact-Morphology-based poly-metallic Nodule Delineation.基于紧凑形态学的多金属结核描绘
Sci Rep. 2017 Oct 17;7(1):13338. doi: 10.1038/s41598-017-13335-x.
8
The FAIR Guiding Principles for scientific data management and stewardship.科学数据管理和保存的 FAIR 指导原则。
Sci Data. 2016 Mar 15;3:160018. doi: 10.1038/sdata.2016.18.
9
Recovery of benthic megafauna from anthropogenic disturbance at a hydrocarbon drilling well (380 m depth in the Norwegian Sea).从挪威海域(水深 380 米)石油钻探井的人为干扰中恢复底栖巨型动物。
PLoS One. 2012;7(10):e44114. doi: 10.1371/journal.pone.0044114. Epub 2012 Oct 8.
10
The 27-year decline of coral cover on the Great Barrier Reef and its causes.大堡礁珊瑚覆盖面积 27 年来的减少及其原因。
Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17995-9. doi: 10.1073/pnas.1208909109. Epub 2012 Oct 1.