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基于苯甲酰胺衍生物作为葡萄糖激酶激活剂的抗糖尿病药物研发:一种计算方法。

Development of antidiabetic drugs from benzamide derivatives as glucokinase activator: A computational approach.

作者信息

Ali Amena

机构信息

Department of Pharmaceutical Chemistry, College of Pharmacy, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia.

出版信息

Saudi J Biol Sci. 2022 May;29(5):3313-3325. doi: 10.1016/j.sjbs.2022.01.058. Epub 2022 Feb 4.

Abstract

Hyperglycemia is a condition known for the impairment of insulin secretion and is responsible for diabetes mellitus. Various small molecule inhibitors have been discovered as glucokinase activators. Recent studies on benzamide derivatives showed their importance in the treatment of diabetes as glucokinase activator. The present manuscript showed a computation study on benzamide derivatives to help in the production of potent glucokinase activators. In the present study, pharmacophore development, 3D-QSAR, and docking studies were performed on benzamide derivatives to find out the important features required for the development of a potential glucokinase activator. The generated pharmacophore hypothesis ADRR_1 consisted of essential features required for the activity. The resultant statistical data showed high significant values with R > 0.99; 0.98 for the training set and Q > 0.52; 0.71 for test set based on atom-based and field-based models, respectively. The potent compound 15b of the series showed a good docking score via binding with different amino acid residues such as (NH…ARG63), (SO…ARG250, THR65), and π-π staking with (phenyl……TYR214). The virtual screening study used 3563 compounds from ZINC database and screened hit compound ZINC08974524, binds with similar amino acids as shown by compound 15b and crystal ligand with docking scores SP (-11.17 kcal/mol) and XP (-8.43 kcal/mol). Compounds were further evaluated by ADME and MMGBSA parameters. Ligands and ZINC hits showed no violation of Lipinski rules. All the screened compounds showed good synthetic accessibility. The present study may be used by researchers for the development of novel benzamide derivatives as glucokinase activator.

摘要

高血糖症是一种以胰岛素分泌受损为特征的病症,是糖尿病的病因。已发现多种小分子抑制剂可作为葡萄糖激酶激活剂。最近对苯甲酰胺衍生物的研究表明它们作为葡萄糖激酶激活剂在糖尿病治疗中的重要性。本手稿展示了一项关于苯甲酰胺衍生物的计算研究,以帮助开发有效的葡萄糖激酶激活剂。在本研究中,对苯甲酰胺衍生物进行了药效团开发、三维定量构效关系(3D-QSAR)和对接研究,以找出开发潜在葡萄糖激酶激活剂所需的重要特征。生成的药效团假设ADRR_1包含活性所需的基本特征。所得统计数据显示出高显著性值,基于原子模型和场模型,训练集的R分别大于0.99和0.98,测试集的Q分别大于0.52和0.71。该系列中的强效化合物15b通过与不同氨基酸残基结合,如(NH…ARG63)、(SO…ARG250、THR65)以及与(苯基……TYR214)的π-π堆积,显示出良好的对接分数。虚拟筛选研究使用了来自ZINC数据库的3563种化合物,并筛选出命中化合物ZINC08974524,其与化合物15b和晶体配体结合的氨基酸相似,对接分数SP为(-11.17千卡/摩尔),XP为(-8.43千卡/摩尔)。通过药物代谢动力学(ADME)和分子力学广义玻恩表面面积(MMGBSA)参数对化合物进行了进一步评估。配体和ZINC命中化合物均未违反Lipinski规则。所有筛选出的化合物均显示出良好的合成可及性。本研究可供研究人员用于开发新型苯甲酰胺衍生物作为葡萄糖激酶激活剂。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c9ed/9280248/90f31bd439cc/fx1.jpg

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