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从分段提取物中鉴定的化合物对葡萄糖激酶刺激的抗糖尿病潜力分析:计算见解。

Profiling the Antidiabetic Potential of Compounds Identified from Fractionated Extracts of toward Glucokinase Stimulation: Computational Insight.

机构信息

College of Medicine, Graduate Institute of Biomedical Sciences, China Medical University, Taichung 40402, Taiwan.

Department of Chemical Sciences, Biochemistry Unit, Afe-Babalola University, Ado-Ekiti 360101, Ekiti State, Nigeria.

出版信息

Molecules. 2023 Jul 30;28(15):5752. doi: 10.3390/molecules28155752.

Abstract

Glucokinase plays an important role in regulating the blood glucose level and serves as an essential therapeutic target in type 2 diabetes management. is a medicinal plant and highly rich source of bioactive ligands with the potency to develop new target drugs for glucokinase such as diabetes and obesity. Therefore, the study explored a computational approach to predict identified compounds from following its intermolecular interactions with the allosteric binding site of the enzymes. We retrieved the three-dimensional (3D) crystal structure of glucokinase (PDB ID: 4L3Q) from the online protein data bank and prepared it using the Maestro 13.5, Schrödinger Suite 2022-3. The compounds identified were subjected to ADME, docking analysis, pharmacophore modeling, and molecular simulation. The results show the binding potential of the identified ligands to the amino acid residues, thereby suggesting an interaction of the amino acids with the ligand at the binding site of the glucokinase activator through conventional chemical bonds such as hydrogen bonds and hydrophobic interactions. The compatibility of the molecules was highly observed when compared with the standard ligand, thereby leading to structural and functional changes. Therefore, the bioactive components from could be a good driver of glucokinase, thereby paving the way for the discovery of therapeutic drugs for the treatment of diabetes and its related complications.

摘要

葡萄糖激酶在调节血糖水平方面发挥着重要作用,是 2 型糖尿病管理的重要治疗靶点。 是一种药用植物,是具有潜力的生物活性配体的丰富来源,可以开发用于治疗糖尿病和肥胖症等疾病的葡萄糖激酶新靶标药物。因此,本研究探索了一种计算方法,以预测从 中鉴定出的化合物,方法是研究其与酶的别构结合位点的分子间相互作用。我们从在线蛋白质数据库中检索了葡萄糖激酶的三维(3D)晶体结构(PDB ID:4L3Q),并使用 Maestro 13.5、Schrödinger Suite 2022-3 对其进行了准备。对鉴定出的化合物进行了 ADME、对接分析、药效团建模和分子模拟。结果表明,鉴定出的配体与氨基酸残基的结合潜力,从而表明氨基酸与葡萄糖激酶激活剂结合位点的配体通过氢键和疏水相互作用等常规化学键相互作用。与标准配体相比,这些分子的相容性得到了高度观察,从而导致结构和功能发生变化。因此, 中的生物活性成分可能是葡萄糖激酶的良好驱动因素,为发现治疗糖尿病及其相关并发症的治疗药物铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28f9/10420681/ad629943a8b1/molecules-28-05752-g001.jpg

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