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盐酸甲福明与人血清白蛋白结合的结构特征:光谱和分子建模技术研究。

Structural aspects of formetanate hydrochloride binding with human serum albumin using spectroscopic and molecular modeling techniques.

机构信息

Amity Institute of Forensic Sciences, Amity University Uttar Pradesh, Noida 201303, India.

Amity Institute of Forensic Sciences, Amity University Uttar Pradesh, Noida 201303, India.

出版信息

Spectrochim Acta A Mol Biomol Spectrosc. 2022 Nov 15;281:121618. doi: 10.1016/j.saa.2022.121618. Epub 2022 Jul 13.

Abstract

Formetanate Hydrochloride (FMT), a highly potent chemical, acts as an insecticide, acaricide, and miticide to protect various fruits and vegetables. The widespread use elevates concern about its presence in the ecosystem, impact upon human health via interaction with biological receptors. Spectroscopic and molecular modeling techniques at different temperatures were used to investigate the binding of FMT with Human serum albumin (HSA) at the molecular level. The experimental and computational results have provided the binding affinity, binding mode, conformational flexibility, and thermodynamic profile of FMT-HSA complex. The FMT binding appears to be spontaneous, and entropy driven. Overall binding affinity of FMT falls within -7.29 to -4.67 Kcal M-1. FMT binds in domain I, subdomain IA of HSA and is stabilized by hydrophobic interactions. Molecular dynamics simulations of the FMT-HSA complex over 100 ns at 288 K, 298 K and 308 K indicated that FMT showed minor adjustments in conformation and placement within the binding site. While, MM/PBSA analysis of the complex provided individual contributions of energy terms. Quantum mechanical (QM) calculations were used to calculate absolute energy values of different poses of FMT which in turn showed minor variations in energy suggesting slight conformational variation in the bound form. The computational results are in agreement with experimental findings.

摘要

盐酸-formetanate(FMT)是一种高效能的化学物质,作为杀虫剂、杀螨剂和杀真菌剂,保护各种水果和蔬菜。由于其广泛使用,人们越来越担心它会出现在生态系统中,并通过与生物受体相互作用对人类健康造成影响。在不同温度下使用光谱和分子建模技术,从分子水平研究了 FMT 与人血清白蛋白(HSA)的结合。实验和计算结果提供了 FMT-HSA 复合物的结合亲和力、结合模式、构象灵活性和热力学特性。FMT 的结合似乎是自发的,并且是熵驱动的。总的来说,FMT 的结合亲和力在-7.29 到-4.67 Kcal M-1 之间。FMT 结合在 HSA 的域 I 和亚域 IA 中,并通过疏水相互作用稳定。在 288 K、298 K 和 308 K 下对 FMT-HSA 复合物进行了 100 ns 的分子动力学模拟,表明 FMT 在构象和结合部位的位置上只有微小的调整。而对复合物进行的 MM/PBSA 分析提供了能量项的个体贡献。量子力学(QM)计算用于计算 FMT 不同构象的绝对能量值,这反过来又表明能量有微小变化,表明结合形式有轻微的构象变化。计算结果与实验结果一致。

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