Department of Physics and INFN, University of Rome Tor Vergata, I-00133 Rome, Italy.
Department of Physics, Harvard University, Cambridge, MA 02138, United States of America.
Rep Prog Phys. 2022 Aug 17;85(9). doi: 10.1088/1361-6633/ac8231.
The growth and evolution of microbial populations is often subjected to advection by fluid flows in spatially extended environments, with immediate consequences for questions of spatial population genetics in marine ecology, planktonic diversity and origin of life scenarios. Here, we review recent progress made in understanding this rich problem in the simplified setting of two competing genetic microbial strains subjected to fluid flows. As a pedagogical example we focus on antagonsim, i.e., two killer microorganism strains, each secreting toxins that impede the growth of their competitors (competitive exclusion), in the presence of stationary fluid flows. By solving two coupled reaction-diffusion equations that include advection by simple steady cellular flows composed of characteristic flow motifs in two dimensions (2D), we show how local flow shear and compressibility effects can interact with selective advantage to have a dramatic influence on genetic competition and fixation in spatially distributed populations. We analyze several 1D and 2D flow geometries including sources, sinks, vortices and saddles, and show how simple analytical models of the dynamics of the genetic interface can be used to shed light on the nucleation, coexistence and flow-driven instabilities of genetic drops. By exploiting an analogy with phase separation with nonconserved order parameters, we uncover how thesedrops harness fluid flows for novel evolutionary strategies, even in the presence of number fluctuations, as confirmed by agent-based simulations as well.
微生物种群的生长和进化通常受到空间扩展环境中流体流动的平流作用的影响,这对海洋生态学中的空间种群遗传学、浮游生物多样性和生命起源场景等问题产生了直接影响。在这里,我们回顾了在两种竞争遗传微生物菌株受流体流动影响的简化环境下理解这一丰富问题的最新进展。作为一个教学示例,我们专注于拮抗作用,即在存在固定流体流动的情况下,两种分泌毒素的杀伤微生物菌株,这些毒素会阻碍其竞争对手的生长(竞争排斥)。通过求解两个耦合的反应-扩散方程,其中包括由二维(2D)中特征流动模式组成的简单稳态细胞流引起的平流,我们展示了局部流动剪切和可压缩性效应对遗传竞争和固定在空间分布种群中的影响如何具有戏剧性的影响。我们分析了几种 1D 和 2D 流动几何形状,包括源、汇、涡和鞍点,并展示了如何使用遗传界面动力学的简单分析模型来阐明遗传滴的成核、共存和流动驱动的不稳定性。通过利用与非保守序参量的相分离的类比,我们揭示了这些滴如何利用流体流动来实现新的进化策略,即使在存在数量波动的情况下也是如此,这一点也得到了基于代理的模拟的证实。