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iFIT:一种基于酶促反应曲线高曲率区域的自动网络工具,用于确定酶动力学参数。

iFIT: An automated web tool for determining enzyme-kinetic parameters based on the high-curvature region of progress curves.

机构信息

University of Ljubljana, Faculty of Medicine, Institute of Biochemistry and Molecular Genetics, Vrazov trg2, Ljubljana.

出版信息

Acta Chim Slov. 2022 Jun 14;69(2):478-482. doi: 10.17344/acsi.2022.7359.

Abstract

The area where progress curve exhibits maximum curvature contains the most information about kinetic parameters. To determine these parameters more accurately from progress curves, we propose an iterative approach that calculates the area of maximum curvature based on an estimate of kinetic parameters and then recalculates the parameters based on time-concentration data points within this area. Based on this algorithm, we developed a computer script called iFIT as a free web application at http://www.i-fit.si. The benefits of working with iFIT are that it decreases the importance of initial substrate concentration and the impact of certain side reactions on the final calculated kinetic parameters.

摘要

在呈现最大曲率的区域中包含有关动力学参数的最多信息。为了更准确地从进展曲线确定这些参数,我们提出了一种迭代方法,该方法根据动力学参数的估计值计算最大曲率区域的面积,然后根据该区域内的时间-浓度数据点重新计算参数。基于此算法,我们开发了一个名为 iFIT 的计算机脚本,并在 http://www.i-fit.si 上作为免费的网络应用程序提供。使用 iFIT 的好处是,它降低了初始底物浓度的重要性和某些副反应对最终计算出的动力学参数的影响。

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