来自坦桑尼亚桑给巴尔的一株携带新型插入元件和两个基因的耐多药肺炎克雷伯菌环境分离株的全基因组序列
Complete Genome Sequence of a Multidrug-Resistant Klebsiella pneumoniae Environmental Isolate from Zanzibar, Tanzania, Harboring Novel Insertion Elements and Two Genes.
作者信息
Lallement Claire, Krogfelt Karen A, Skovgaard Ole, Jelsbak Lotte
机构信息
Department of Science and Environment, Roskilde University, Roskilde, Denmark.
出版信息
Microbiol Resour Announc. 2022 Aug 18;11(8):e0026322. doi: 10.1128/mra.00263-22. Epub 2022 Jul 14.
Abstract
Here, we report the annotated whole-genome sequence of Klebsiella pneumoniae strain KP_3b, isolated in Zanzibar, Tanzania, from plastic litter. The strain is extended-spectrum β-lactamase (ESBL) producing and multidrug resistant, encoding 17 resistance genes, most of which are located on a 230,544-bp plasmid. The isolate contains two copies of the gene and novel insertion elements.
摘要
在此，我们报告了从坦桑尼亚桑给巴尔的塑料垃圾中分离出的肺炎克雷伯菌菌株KP_3b的全基因组序列注释。该菌株产超广谱β-内酰胺酶（ESBL）且具有多重耐药性，编码17个耐药基因，其中大部分位于一个230,544碱基对的质粒上。该分离株含有两个 基因拷贝和新型插入元件。
相似文献
1
Complete Genome Sequence of a Multidrug-Resistant Klebsiella pneumoniae Environmental Isolate from Zanzibar, Tanzania, Harboring Novel Insertion Elements and Two Genes.
Microbiol Resour Announc. 2022 Aug 18;11(8):e0026322. doi: 10.1128/mra.00263-22. Epub 2022 Jul 14.
2
Multidrug-resistant Klebsiella pneumoniae harboring extended spectrum β-lactamase encoding genes isolated from human septicemias.
PLoS One. 2021 May 4;16(5):e0250525. doi: 10.1371/journal.pone.0250525. eCollection 2021.
3
Whole Genome Sequencing of Extended Spectrum β-lactamase (ESBL)-producing Klebsiella pneumoniae Isolated from Hospitalized Patients in KwaZulu-Natal, South Africa.
Sci Rep. 2019 Apr 18;9(1):6266. doi: 10.1038/s41598-019-42672-2.
4
Emergence and Evolution of Multidrug-Resistant Klebsiella pneumoniae with both and Integrated in the Chromosome.
Antimicrob Agents Chemother. 2017 Jun 27;61(7). doi: 10.1128/AAC.00076-17. Print 2017 Jul.
5
6
Multidrug-Resistant ESBL/AmpC-Producing Isolated from Healthy Thoroughbred Racehorses in Japan.
Animals (Basel). 2020 Feb 25;10(3):369. doi: 10.3390/ani10030369.
7
Phenotypic and Molecular Characterization of Antimicrobial Resistance in Klebsiella spp. Isolates from Companion Animals in Japan: Clonal Dissemination of Multidrug-Resistant Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae.
Front Microbiol. 2016 Jun 29;7:1021. doi: 10.3389/fmicb.2016.01021. eCollection 2016.
8
Genomics and Virulence of Kpnu95 ST1412 Harboring a Novel Incf Plasmid Encoding ctx-M-15 and Causing Community Urinary Tract Infection.
Microorganisms. 2021 May 10;9(5):1022. doi: 10.3390/microorganisms9051022.
9
Genomic Identity of Fluoroquinolone-Resistant blaCTX-M-15-Type ESBL and pMAmpC β-Lactamase Producing Klebsiella pneumoniae from Buffalo Milk, India.
Microb Drug Resist. 2018 Nov;24(9):1345-1353. doi: 10.1089/mdr.2017.0368. Epub 2018 Mar 22.
10
The Genomic Characterization of KPC-Producing from the ICU of a Teaching Hospital in Shanghai, China.
Infect Drug Resist. 2022 Jan 11;15:69-81. doi: 10.2147/IDR.S343673. eCollection 2022.
引用本文的文献
1
Complete Genome Sequences of Extraintestinal Pathogenic Escherichia coli Clinical Isolates from Danish Ulcerative Colitis Patients.
Microbiol Resour Announc. 2023 Feb 16;12(2):e0118622. doi: 10.1128/mra.01186-22. Epub 2023 Jan 30.
本文引用的文献
1
Whole-Genome Sequencing for Molecular Characterization of Carbapenem-Resistant Enterobacteriaceae Causing Lower Urinary Tract Infection among Pediatric Patients.
Antibiotics (Basel). 2021 Aug 12;10(8):972. doi: 10.3390/antibiotics10080972.
2
Overexpression of Efflux Pumps Mediate Pan Resistance of Sequence Type 11.
Microb Drug Resist. 2021 Oct;27(10):1405-1411. doi: 10.1089/mdr.2020.0395. Epub 2021 Apr 9.
3
Isolation and characterization of human pathogenic multidrug resistant bacteria associated with plastic litter collected in Zanzibar.
J Hazard Mater. 2021 Mar 5;405:124591. doi: 10.1016/j.jhazmat.2020.124591. Epub 2020 Nov 28.
4
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.
Nucleic Acids Res. 2021 Jan 8;49(D1):D1020-D1028. doi: 10.1093/nar/gkaa1105.
5
Resistance to piperacillin/tazobactam in Escherichia coli resulting from extensive IS26-associated gene amplification of blaTEM-1.
J Antimicrob Chemother. 2019 Nov 1;74(11):3179-3183. doi: 10.1093/jac/dkz349.
6
Assembly of long, error-prone reads using repeat graphs.
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
7
Fast and accurate de novo genome assembly from long uncorrected reads.
Genome Res. 2017 May;27(5):737-746. doi: 10.1101/gr.214270.116. Epub 2017 Jan 18.
8
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.
Bioinformatics. 2016 Jul 15;32(14):2103-10. doi: 10.1093/bioinformatics/btw152. Epub 2016 Mar 19.
9
Identification of acquired antimicrobial resistance genes.
J Antimicrob Chemother. 2012 Nov;67(11):2640-4. doi: 10.1093/jac/dks261. Epub 2012 Jul 10.
10
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
Zotero 插件