来自坦桑尼亚桑给巴尔的一株携带新型插入元件和两个基因的耐多药肺炎克雷伯菌环境分离株的全基因组序列
Complete Genome Sequence of a Multidrug-Resistant Klebsiella pneumoniae Environmental Isolate from Zanzibar, Tanzania, Harboring Novel Insertion Elements and Two Genes.
作者信息
Lallement Claire, Krogfelt Karen A, Skovgaard Ole, Jelsbak Lotte
机构信息
Department of Science and Environment, Roskilde University, Roskilde, Denmark.
出版信息
Microbiol Resour Announc. 2022 Aug 18;11(8):e0026322. doi: 10.1128/mra.00263-22. Epub 2022 Jul 14.
Abstract
Here, we report the annotated whole-genome sequence of Klebsiella pneumoniae strain KP_3b, isolated in Zanzibar, Tanzania, from plastic litter. The strain is extended-spectrum β-lactamase (ESBL) producing and multidrug resistant, encoding 17 resistance genes, most of which are located on a 230,544-bp plasmid. The isolate contains two copies of the gene and novel insertion elements.
摘要
在此，我们报告了从坦桑尼亚桑给巴尔的塑料垃圾中分离出的肺炎克雷伯菌菌株KP_3b的全基因组序列注释。该菌株产超广谱β-内酰胺酶（ESBL）且具有多重耐药性，编码17个耐药基因，其中大部分位于一个230,544碱基对的质粒上。该分离株含有两个 基因拷贝和新型插入元件。
相似文献
1
Complete Genome Sequence of a Multidrug-Resistant Klebsiella pneumoniae Environmental Isolate from Zanzibar, Tanzania, Harboring Novel Insertion Elements and Two Genes.来自坦桑尼亚桑给巴尔的一株携带新型插入元件和两个基因的耐多药肺炎克雷伯菌环境分离株的全基因组序列
Microbiol Resour Announc. 2022 Aug 18;11(8):e0026322. doi: 10.1128/mra.00263-22. Epub 2022 Jul 14.
2
Multidrug-resistant Klebsiella pneumoniae harboring extended spectrum β-lactamase encoding genes isolated from human septicemias.从脓毒症患者中分离到携带产超广谱β-内酰胺酶基因的多重耐药肺炎克雷伯菌。
PLoS One. 2021 May 4;16(5):e0250525. doi: 10.1371/journal.pone.0250525. eCollection 2021.
3
Whole Genome Sequencing of Extended Spectrum β-lactamase (ESBL)-producing Klebsiella pneumoniae Isolated from Hospitalized Patients in KwaZulu-Natal, South Africa.南非夸祖鲁-纳塔尔省住院患者中产超广谱β-内酰胺酶（ESBL）肺炎克雷伯菌的全基因组测序。
Sci Rep. 2019 Apr 18;9(1):6266. doi: 10.1038/s41598-019-42672-2.
4
Emergence and Evolution of Multidrug-Resistant Klebsiella pneumoniae with both and Integrated in the Chromosome.染色体上同时整合了[具体内容缺失]和[具体内容缺失]的多重耐药肺炎克雷伯菌的出现与进化
Antimicrob Agents Chemother. 2017 Jun 27;61(7). doi: 10.1128/AAC.00076-17. Print 2017 Jul.
5
6
Multidrug-Resistant ESBL/AmpC-Producing Isolated from Healthy Thoroughbred Racehorses in Japan.从日本健康纯种赛马中分离出的产超广谱β-内酰胺酶/头孢菌素酶的多重耐药菌
Animals (Basel). 2020 Feb 25;10(3):369. doi: 10.3390/ani10030369.
7
Phenotypic and Molecular Characterization of Antimicrobial Resistance in Klebsiella spp. Isolates from Companion Animals in Japan: Clonal Dissemination of Multidrug-Resistant Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae.日本伴侣动物分离的克雷伯菌属菌株耐药性的表型和分子特征：产超广谱β-内酰胺酶的多重耐药肺炎克雷伯菌的克隆传播
Front Microbiol. 2016 Jun 29;7:1021. doi: 10.3389/fmicb.2016.01021. eCollection 2016.
8
Genomics and Virulence of Kpnu95 ST1412 Harboring a Novel Incf Plasmid Encoding ctx-M-15 and Causing Community Urinary Tract Infection.携带编码ctx-M-15的新型Incf质粒并引起社区获得性尿路感染的Kpnu95 ST1412的基因组学与毒力
Microorganisms. 2021 May 10;9(5):1022. doi: 10.3390/microorganisms9051022.
9
Genomic Identity of Fluoroquinolone-Resistant blaCTX-M-15-Type ESBL and pMAmpC β-Lactamase Producing Klebsiella pneumoniae from Buffalo Milk, India.印度水牛乳中耐氟喹诺酮的blaCTX-M-15型超广谱β-内酰胺酶及pMAmpCβ-内酰胺酶产肺炎克雷伯菌的基因组特征
Microb Drug Resist. 2018 Nov;24(9):1345-1353. doi: 10.1089/mdr.2017.0368. Epub 2018 Mar 22.
10
The Genomic Characterization of KPC-Producing from the ICU of a Teaching Hospital in Shanghai, China.中国上海一家教学医院重症监护病房产KPC菌株的基因组特征分析
Infect Drug Resist. 2022 Jan 11;15:69-81. doi: 10.2147/IDR.S343673. eCollection 2022.
引用本文的文献
1
Complete Genome Sequences of Extraintestinal Pathogenic Escherichia coli Clinical Isolates from Danish Ulcerative Colitis Patients.来自丹麦溃疡性结肠炎患者的肠外致病性大肠杆菌临床分离株的全基因组序列
Microbiol Resour Announc. 2023 Feb 16;12(2):e0118622. doi: 10.1128/mra.01186-22. Epub 2023 Jan 30.
本文引用的文献
1
Whole-Genome Sequencing for Molecular Characterization of Carbapenem-Resistant Enterobacteriaceae Causing Lower Urinary Tract Infection among Pediatric Patients.全基因组测序用于小儿患者下尿路感染的耐碳青霉烯类肠杆菌科细菌的分子特征分析
Antibiotics (Basel). 2021 Aug 12;10(8):972. doi: 10.3390/antibiotics10080972.
2
Overexpression of Efflux Pumps Mediate Pan Resistance of Sequence Type 11.外排泵的过度表达介导了 11 型序列类型的泛耐药性。
Microb Drug Resist. 2021 Oct;27(10):1405-1411. doi: 10.1089/mdr.2020.0395. Epub 2021 Apr 9.
3
Isolation and characterization of human pathogenic multidrug resistant bacteria associated with plastic litter collected in Zanzibar.从桑给巴尔收集的塑料垃圾中分离并鉴定与人类相关的多药耐药病原菌。
J Hazard Mater. 2021 Mar 5;405:124591. doi: 10.1016/j.jhazmat.2020.124591. Epub 2020 Nov 28.
4
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.RefSeq：通过蛋白质家族模型编纂扩展原核生物基因组注释管道的覆盖范围。
Nucleic Acids Res. 2021 Jan 8;49(D1):D1020-D1028. doi: 10.1093/nar/gkaa1105.
5
Resistance to piperacillin/tazobactam in Escherichia coli resulting from extensive IS26-associated gene amplification of blaTEM-1.产 ESBLs 大肠埃希菌中 blaTEM-1 基因广泛的 IS26 相关基因扩增导致对哌拉西林/他唑巴坦的耐药性。
J Antimicrob Chemother. 2019 Nov 1;74(11):3179-3183. doi: 10.1093/jac/dkz349.
6
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
7
Fast and accurate de novo genome assembly from long uncorrected reads.从长的未校正读段中进行快速且准确的从头基因组组装。
Genome Res. 2017 May;27(5):737-746. doi: 10.1101/gr.214270.116. Epub 2017 Jan 18.
8
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.Minimap和miniasm：用于有噪声长序列的快速映射和从头组装。
Bioinformatics. 2016 Jul 15;32(14):2103-10. doi: 10.1093/bioinformatics/btw152. Epub 2016 Mar 19.
9
Identification of acquired antimicrobial resistance genes.获得性抗菌耐药基因的鉴定。
J Antimicrob Chemother. 2012 Nov;67(11):2640-4. doi: 10.1093/jac/dks261. Epub 2012 Jul 10.
10
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
Zotero 插件