来自丹麦溃疡性结肠炎患者的肠外致病性大肠杆菌临床分离株的全基因组序列
Complete Genome Sequences of Extraintestinal Pathogenic Escherichia coli Clinical Isolates from Danish Ulcerative Colitis Patients.
作者信息
Meski Simon, Struve Carsten, Mirsepasi-Lauridsen Hengameh C, Petersen Andreas M, Jelsbak Lotte, Skovgaard Ole, Krogfelt Karen A
机构信息
Department of Science and Environment, Roskilde University, Roskilde, Denmark.
Department of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark.
出版信息
Microbiol Resour Announc. 2023 Feb 16;12(2):e0118622. doi: 10.1128/mra.01186-22. Epub 2023 Jan 30.
Abstract
Extraintestinal pathogenic Escherichia coli (ExPEC) is a potential factor in ulcerative colitis etiology. We report here the complete genome and plasmid sequences of three Escherichia coli isolates, C 237-04 (p7), C 236-04A (p10A), and C 691-04A (p19A), obtained from fecal samples from ulcerative colitis patients in Copenhagen, Denmark.
摘要
肠外致病性大肠杆菌（ExPEC）是溃疡性结肠炎病因中的一个潜在因素。我们在此报告从丹麦哥本哈根溃疡性结肠炎患者粪便样本中分离出的三株大肠杆菌C 237 - 04（p7）、C 236 - 04A（p10A）和C 691 - 04A（p19A）的全基因组和质粒序列。
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Microbiol Resour Announc. 2022 Aug 18;11(8):e0026322. doi: 10.1128/mra.00263-22. Epub 2022 Jul 14.
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Front Med (Lausanne). 2021 Dec 3;8:730243. doi: 10.3389/fmed.2021.730243. eCollection 2021.
3
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