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本文引用的文献

1

Network analysis of ten thousand genomes shed light on Pseudomonas diversity and classification.对一万个基因组的网络分析揭示了假单胞菌的多样性和分类。

Microbiol Res. 2022 Jan;254:126919. doi: 10.1016/j.micres.2021.126919. Epub 2021 Nov 15.

2

TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.TYGS 是一个自动化的高通量平台，用于最先进的基于基因组的分类学。

Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.

3

Genome-based evolutionary history of Pseudomonas spp.基于基因组的假单胞菌属进化史

Environ Microbiol. 2018 Jun;20(6):2142-2159. doi: 10.1111/1462-2920.14130. Epub 2018 Jul 22.

4

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果

PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.

5

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.全细菌生物信息学数据库与分析资源中心PATRIC的改进。

Nucleic Acids Res. 2017 Jan 4;45(D1):D535-D542. doi: 10.1093/nar/gkw1017. Epub 2016 Nov 29.

6

RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.RASTtk：一种用于构建定制注释管道和批量注释基因组的RAST算法的模块化可扩展实现。

Sci Rep. 2015 Feb 10;5:8365. doi: 10.1038/srep08365.

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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。

PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.

从马萨诸塞州科德角国家海岸的泥炭和沙质沼泽土壤中分离出的假单胞菌属菌株MWU12 - 2037和MWU12 - 2345的基因组序列草图

Draft Genome Sequences of Pseudomonas sp. Strains MWU12-2037 and MWU12-2345, Isolated from Peat and Sandy Bog Soils in the Cape Cod National Seashore, Massachusetts.

作者信息

Anasi Ayman, Soby Scott

机构信息

Biomedical Sciences, College of Graduate Studies, Midwestern University, Glendale, Arizona, USA.

College of Veterinary Medicine, Midwestern University, Glendale, Arizona, USA.

出版信息

Microbiol Resour Announc. 2022 Aug 18;11(8):e0053622. doi: 10.1128/mra.00536-22. Epub 2022 Jul 12.

DOI:10.1128/mra.00536-22

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9387251/

Abstract

Pseudomonas sp. strains MWU12-2037 and MWU12-2345 were isolated from peat and sandy bog soils in wild cranberry bogs in the Cape Cod National Seashore (Massachusetts, USA) as part of a culture-dependent survey of relatively unexplored wetlands soil microbiomes. Both genomes exceeded 7 Mbp.

摘要

假单胞菌属菌株MWU12 - 2037和MWU12 - 2345是从美国马萨诸塞州科德角国家海岸野生蔓越莓沼泽地的泥炭和沙质沼泽土壤中分离出来的，这是一项对相对未被充分探索的湿地土壤微生物群落进行的基于培养的调查的一部分。两个基因组都超过了7兆碱基对。