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P 型五肽重复蛋白 DWEORG1 是拟南芥线粒体中一种非先前报道的 rPPR 蛋白。

The P-type pentatricopeptide repeat protein DWEORG1 is a non-previously reported rPPR protein of Arabidopsis mitochondria.

机构信息

Abteilung Botanische Genetik und Molekularbiologie, Botanisches Institut und Botanischer Garten, Christian-Albrechts-Universität zu Kiel, Olshausenstraße 40, 24098, Kiel, Germany.

Institut Jean-Pierre Bourgin INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles, France.

出版信息

Sci Rep. 2022 Jul 21;12(1):12492. doi: 10.1038/s41598-022-16812-0.

DOI:10.1038/s41598-022-16812-0
PMID:35864185
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9304396/
Abstract

Gene expression in plant mitochondria is mainly regulated by nuclear-encoded proteins on a post-transcriptional level. Pentatricopeptide repeat (PPR) proteins play a major role by participating in mRNA stability, splicing, RNA editing, and translation initiation. PPR proteins were also shown to be part of the mitochondrial ribosome (rPPR proteins), which may act as regulators of gene expression in plants. In this study, we focus on a mitochondrial-located P-type PPR protein-DWEORG1-from Arabidopsis thaliana. Its abundance in mitochondria is high, and it has a similar expression pattern as rPPR proteins. Mutant dweorg1 plants exhibit a slow-growth phenotype. Using ribosome profiling, a decrease in translation efficiency for cox2, rps4, rpl5, and ccmF was observed in dweorg1 mutants, correlating with a reduced accumulation of the Cox2 protein in these plants. In addition, the mitochondrial rRNA levels are significantly reduced in dweorg1 compared with the wild type. DWEORG1 co-migrates with the ribosomal proteins Rps4 and Rpl16 in sucrose gradients, suggesting an association of DWEORG1 with the mitoribosome. Collectively, this data suggests that DWEORG1 encodes a novel rPPR protein that is needed for the translation of cox2, rps4, rpl5, and ccmF and provides a stabilizing function for mitochondrial ribosomes.

摘要

植物线粒体中的基因表达主要是通过核编码蛋白在转录后水平上进行调控的。五肽重复(PPR)蛋白通过参与 mRNA 稳定性、剪接、RNA 编辑和翻译起始等过程发挥主要作用。PPR 蛋白还被证明是线粒体核糖体(rPPR 蛋白)的一部分,可能作为植物基因表达的调节剂。在本研究中,我们关注来自拟南芥的一种定位于线粒体的 P 型 PPR 蛋白-DWEORG1。它在线粒体中的丰度很高,并且与 rPPR 蛋白具有相似的表达模式。dweorg1 突变体植物表现出生长缓慢的表型。使用核糖体图谱分析,我们观察到 dweorg1 突变体中 cox2、rps4、rpl5 和 ccmF 的翻译效率下降,这与这些植物中 Cox2 蛋白积累减少相关。此外,与野生型相比,dweorg1 中的线粒体 rRNA 水平显著降低。DWEORG1 在蔗糖梯度中与核糖体蛋白 Rps4 和 Rpl16 共迁移,表明 DWEORG1 与线粒体核糖体相关联。总之,这些数据表明 DWEORG1 编码一种新型的 rPPR 蛋白,该蛋白对于 cox2、rps4、rpl5 和 ccmF 的翻译是必需的,并为线粒体核糖体提供稳定功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/ee619d27f949/41598_2022_16812_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/aa3ed0283ab8/41598_2022_16812_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/d20c2e2f7d84/41598_2022_16812_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/b6170fa6e06f/41598_2022_16812_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/f1eae18ea88e/41598_2022_16812_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/367a2cd2198a/41598_2022_16812_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/ee619d27f949/41598_2022_16812_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/aa3ed0283ab8/41598_2022_16812_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/d20c2e2f7d84/41598_2022_16812_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/b6170fa6e06f/41598_2022_16812_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/f1eae18ea88e/41598_2022_16812_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/367a2cd2198a/41598_2022_16812_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ab4/9304396/ee619d27f949/41598_2022_16812_Fig6_HTML.jpg

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