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功能招募的漫长之路——牵牛花(旋花科)中一个基因复制体向吡咯里西啶生物碱生物合成的进化

The long road of functional recruitment-The evolution of a gene duplicate to pyrrolizidine alkaloid biosynthesis in the morning glories (Convolvulaceae).

作者信息

Prakashrao Arunraj Saranya, Beuerle Till, Simões Ana Rita G, Hopf Christina, Çiçek Serhat Sezai, Stegemann Thomas, Ober Dietrich, Kaltenegger Elisabeth

机构信息

Department Biochemical Ecology and Molecular Evolution, Botanical Institute Christian-Albrechts-University Kiel Germany.

Present address: Heart Research Center Göttingen University Medical Center Göttingen Göttingen Germany.

出版信息

Plant Direct. 2022 Jul 19;6(7):e420. doi: 10.1002/pld3.420. eCollection 2022 Jul.

DOI:10.1002/pld3.420
PMID:35865076
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9295680/
Abstract

In plants, homospermidine synthase (HSS) is a pathway-specific enzyme initiating the biosynthesis of pyrrolizidine alkaloids (PAs), which function as a chemical defense against herbivores. In PA-producing Convolvulaceae ("morning glories"), HSS originated from deoxyhypusine synthase at least >50 to 75 million years ago via a gene duplication event and subsequent functional diversification. To study the recruitment of this ancient gene duplicate to PA biosynthesis, the presence of putative gene copies in 11 Convolvulaceae species was analyzed. Additionally, various plant parts from seven of these species were screened for the presence of PAs. Although all of these species possess a putative copy, PAs could only be detected in roots of (Spreng.) O'Donell and (L.) A.R.Simões & Staples in this study. A precursor of PAs was detected in roots of L. Thus, despite sharing high sequence identities, the presence of an gene copy does not correlate with PA accumulation in particular species of Convolvulaceae. In vitro activity assays of the encoded enzymes revealed a broad spectrum of enzyme activity, further emphasizing a functional diversity of the gene copies. A recently identified HSS specific amino acid motif seems to be important for the loss of the ancestral protein function-the activation of the eukaryotic initiation factor 5A (eIF5A). Thus, the motif might be indicative for a change of function but allows not to predict the new function. This emphasizes the challenges in annotating functions for duplicates, even for duplicates from closely related species.

摘要

在植物中,高同型亚精胺合酶(HSS)是启动吡咯里西啶生物碱(PA)生物合成的途径特异性酶,PA作为一种对食草动物的化学防御物质发挥作用。在产生PA的旋花科植物(“牵牛花”)中,HSS至少在5000万至7500万年前通过基因复制事件及随后的功能多样化从脱氧hypusine合酶起源。为了研究这个古老的基因复制体在PA生物合成中的作用,分析了11种旋花科植物中假定基因拷贝的存在情况。此外,对其中7个物种的各种植物部位进行了PA检测。尽管所有这些物种都有一个假定的拷贝,但在本研究中,仅在圆叶牵牛(Spreng.)O'Donell和变色牵牛(L.)A.R.Simões & Staples的根中检测到了PA。在裂叶牵牛的根中检测到了PA的前体。因此,尽管序列同一性很高,但在特定的旋花科物种中,HSS基因拷贝的存在与PA积累并无关联。对编码酶的体外活性测定揭示了广泛的酶活性谱,进一步强调了HSS基因拷贝的功能多样性。最近鉴定出的HSS特异性氨基酸基序似乎对祖先蛋白功能的丧失——真核起始因子5A(eIF5A)的激活很重要。因此,该基序可能指示功能的变化,但无法预测新功能。这凸显了注释重复基因功能的挑战,即使是来自密切相关物种的重复基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6db9/9295680/8ce1f77d14cb/PLD3-6-e420-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6db9/9295680/509fd45080c0/PLD3-6-e420-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6db9/9295680/54c07fa1ec9d/PLD3-6-e420-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6db9/9295680/b42f04181bf9/PLD3-6-e420-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6db9/9295680/8ce1f77d14cb/PLD3-6-e420-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6db9/9295680/509fd45080c0/PLD3-6-e420-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6db9/9295680/54c07fa1ec9d/PLD3-6-e420-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6db9/9295680/b42f04181bf9/PLD3-6-e420-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6db9/9295680/8ce1f77d14cb/PLD3-6-e420-g002.jpg

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