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FishShapes v1:三种维度下硬骨鱼类形状和大小的功能相关测量

FishShapes v1: Functionally relevant measurements of teleost shape and size on three dimensions.

机构信息

Department of Biological Sciences, Clemson University, Clemson, South Carolina, USA.

Department of Evolution & Ecology, University of California Davis, Davis, California, USA.

出版信息

Ecology. 2022 Dec;103(12):e3829. doi: 10.1002/ecy.3829. Epub 2022 Sep 25.

DOI:10.1002/ecy.3829
PMID:35869828
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10078225/
Abstract

Teleost fishes account for 96% of all fish species and exhibit a spectacular variety of body forms. Teleost lineages range from deep bodied to elongate (e.g., eels, needlefish), laterally compressed (e.g., ribbonfish) to globular (e.g., pufferfish), and include uniquely shaped lineages such as seahorses, flatfishes, and ocean sunfishes. Adaptive body shape convergence within fishes has long been hypothesized but the nature of the relationships between fish form and ecological and environmental variables remain largely unknown at the macroevolutionary scale. To facilitate the investigation of the interacting factors influencing teleost body shape evolution we measured eight functionally relevant linear traits on adult-sized specimens along with specimen mass. Linear measurements of standard length, maximum body depth, maximum fish width, lower jaw length, mouth width, head depth, minimum caudal peduncle depth, and minimum caudal peduncle width were taken in millimeters with calipers, or tape measures for oversized specimens. We measured these traits on a total of 16,523 specimens (1-3 specimens per species) at the Smithsonian National Museum of Natural History and took approximately 7000 person hours of data collection to complete. The data went through a three-step error-checking process to clean and validate the data and then species averages were calculated. We present the complete specimen data set, which encompasses approximately one-fifth of extant teleost species diversity, spanning ~90% of teleost families and ~96% of orders. The species and family names are compatible with the taxonomy used by FishBase and the order information with the phylogenetically informed taxonomy of Betancur-R and colleagues published in 2014. This dataset is licensed under Creative Commons CC0 1.0 Universal (CC0 1.0) but please cite this paper when using the data or a subset of it.

摘要

硬骨鱼类约占所有鱼类物种的 96%,其身体形态种类繁多。硬骨鱼类的谱系范围从深体到拉长(例如鳗鱼、针鱼),从横向压缩(例如带鱼)到球形(例如河豚),并包括独特形状的谱系,如海马、比目鱼和翻车鱼。鱼类中适应性身体形状的趋同早已被假设,但鱼类形态与生态和环境变量之间的关系本质在宏观进化尺度上仍知之甚少。为了便于研究影响硬骨鱼身体形状进化的相互作用因素,我们测量了成年标本的 8 个功能相关的线性特征,以及标本质量。使用卡尺或卷尺对超大标本进行了毫米级别的标准长度、最大身体深度、最大鱼宽、下颚长度、口宽、头深、最小尾柄深度和最小尾柄宽度的线性测量。我们在史密森尼国家自然历史博物馆总共测量了 16523 个标本(每个物种 1-3 个标本),完成这项工作大约需要 7000 个人工时的数据收集。该数据经过三步错误检查过程来清理和验证数据,然后计算出物种平均值。我们提供了完整的标本数据集,其中包含了大约五分之一的现存硬骨鱼类物种多样性,涵盖了大约 90%的硬骨鱼类科和约 96%的目。物种和科名与 FishBase 使用的分类法兼容,目信息与 2014 年 Betancur-R 及其同事发表的基于系统发育信息的分类法兼容。该数据集根据知识共享署名 4.0 国际许可协议(CC BY 4.0)进行许可,但在使用数据或其子集时请引用本文。