Ghafouri Fatemeh, Ahangari Cohan Reza, Samimi Hilda, Hosseini Rad S M Ali, Naderi Mahmood, Noorbakhsh Farshid, Haghpanah Vahid
Department of Biotechnology Faculty of Life Sciences and Biotechnology Shahid Beheshti University Tehran Iran.
Department of Nanobiotechnology New Technologies Research Group Pasteur Institute of Iran Tehran Iran.
JMIR Bioinform Biotechnol. 2022 Jul 19;3(1):e36100. doi: 10.2196/36100. eCollection 2022 Jan-Dec.
Since the first appearance of SARS-CoV-2 in China in December 2019, the world witnessed the emergence of the SARS-CoV-2 outbreak. Due to the high transmissibility rate of the virus, there is an urgent need to design and develop vaccines against SARS-CoV-2 to prevent more cases affected by the virus.
A computational approach is proposed for vaccine design against the SARS-CoV-2 spike (S) protein, as the key target for neutralizing antibodies, and envelope (E) protein, which contains a conserved sequence feature.
We used previously reported epitopes of S protein detected experimentally and further identified a collection of predicted B-cell and major histocompatibility (MHC) class II-restricted T-cell epitopes derived from E proteins with an identical match to SARS-CoV-2 E protein.
The in silico design of our candidate vaccine against the S and E proteins of SARS-CoV-2 demonstrated a high affinity to MHC class II molecules and effective results in immune response simulations.
Based on the results of this study, the multiepitope vaccine designed against the S and E proteins of SARS-CoV-2 may be considered as a new, safe, and efficient approach to combatting the COVID-19 pandemic.
自2019年12月严重急性呼吸综合征冠状病毒2(SARS-CoV-2)在中国首次出现以来,全球见证了SARS-CoV-2疫情的爆发。由于该病毒的高传播率,迫切需要设计和开发针对SARS-CoV-2的疫苗,以预防更多受该病毒感染的病例。
提出一种计算方法,用于设计针对SARS-CoV-2刺突(S)蛋白(作为中和抗体的关键靶点)和包膜(E)蛋白(含有保守序列特征)的疫苗。
我们使用先前通过实验检测到的S蛋白表位,并进一步鉴定了一组源自E蛋白的预测B细胞和主要组织相容性复合体(MHC)II类限制性T细胞表位,这些表位与SARS-CoV-2 E蛋白完全匹配。
我们针对SARS-CoV-2的S和E蛋白设计的候选疫苗的计算机模拟设计显示出对MHC II类分子的高亲和力,并在免疫反应模拟中取得了有效结果。
基于本研究结果,针对SARS-CoV-2的S和E蛋白设计的多表位疫苗可被视为对抗2019冠状病毒病大流行的一种新的、安全且有效的方法。