• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

液态苯甲腈的体相和表面性质的模拟研究:环堆积评估与反褶积

Simulation Investigation of Bulk and Surface Properties of Liquid Benzonitrile: Ring Stacking-Assessment and Deconvolution.

作者信息

Sakhtemanian Leila, Ghatee Mohammad Hadi

机构信息

Department of Chemistry, Shiraz University, Shiraz 71946, Iran.

出版信息

ACS Omega. 2022 Jul 15;7(29):25693-25704. doi: 10.1021/acsomega.2c00953. eCollection 2022 Jul 26.

DOI:10.1021/acsomega.2c00953
PMID:35910170
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9330290/
Abstract

The content and the molecular dynamics (MD) simulation analysis here are inspired by our recent calculation on benzonitrile (BZN), whereas the present results are to expand and develop macroscopic documentation involving data verification. MD simulations of the bulk liquid BZN in the range of 293-323 K unravel the hydrogen bond (-C≡N···H) formation with strength in the order of -H ≫ -H ∼> -H. The possibility for -Hs to get involved in the formation of two bonds simultaneously confirms each having σ- and π-bonding features. Accordingly, we used vast efforts for structural analysis particularly based on the deconvolution of the corresponding complex correlation functions. Specific angle-dependent correlation functions led to the recognition of the molecular stacking with a strict anti-parallel orientation. The in-plane dimer and trimer also take part in the structural recognition. A singularity, found in the trend of the simulated temperature-dependent viscosity and diffusion coefficient of liquid BZN, is centered at about 313 K and quite fascinatingly emulates the reported experiment viscosity. An interplay between a small change in the trend of density and a large change in the corresponding viscosity is a key factor in supporting the singularity. Deconvolution of the simulation results allows attributing the singularity to structural alteration involving H-bonding of different types and extent. Approaching the range of 308-313 K, an alteration between hydrogen bond formation involving mostly -Hs and mixed -Hs + -H is possible and supports the singularity.

摘要

本文的内容及分子动力学(MD)模拟分析受到我们近期对苯甲腈(BZN)计算的启发,而目前的结果旨在扩展和发展涉及数据验证的宏观文献。对293 - 323 K范围内的本体液态BZN进行MD模拟,揭示了氢键(-C≡N···H)的形成,其强度顺序为-H ≫ -H ∼> -H。-Hs同时参与形成两个键的可能性证实了每个键都具有σ键和π键特征。因此,我们付出了巨大努力进行结构分析,特别是基于对相应复杂相关函数的反卷积。特定角度相关函数导致识别出具有严格反平行取向的分子堆积。面内二聚体和三聚体也参与了结构识别。在液态BZN模拟的温度依赖性粘度和扩散系数趋势中发现的一个奇点,集中在约313 K处,非常有趣地模拟了报道的实验粘度。密度趋势的微小变化与相应粘度的大变化之间的相互作用是支持该奇点的关键因素。对模拟结果进行反卷积可以将奇点归因于涉及不同类型和程度氢键的结构改变。接近308 - 313 K范围时,主要涉及-Hs的氢键形成与混合的-Hs + -H之间的变化是可能的,并支持了该奇点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/53d2952508bf/ao2c00953_0013.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/1546734fa8a2/ao2c00953_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/8d701491f23f/ao2c00953_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/d5313050520c/ao2c00953_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/1fcb2cf376be/ao2c00953_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/ed8c6c514e00/ao2c00953_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/f71393ccb43e/ao2c00953_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/23fb1207a7df/ao2c00953_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/6617daec4b05/ao2c00953_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/4b234a824f23/ao2c00953_0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/6fbb75d8558c/ao2c00953_0011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/2cf1549968a1/ao2c00953_0012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/53d2952508bf/ao2c00953_0013.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/1546734fa8a2/ao2c00953_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/8d701491f23f/ao2c00953_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/d5313050520c/ao2c00953_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/1fcb2cf376be/ao2c00953_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/ed8c6c514e00/ao2c00953_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/f71393ccb43e/ao2c00953_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/23fb1207a7df/ao2c00953_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/6617daec4b05/ao2c00953_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/4b234a824f23/ao2c00953_0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/6fbb75d8558c/ao2c00953_0011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/2cf1549968a1/ao2c00953_0012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe5f/9330290/53d2952508bf/ao2c00953_0013.jpg

相似文献

1
Simulation Investigation of Bulk and Surface Properties of Liquid Benzonitrile: Ring Stacking-Assessment and Deconvolution.液态苯甲腈的体相和表面性质的模拟研究:环堆积评估与反褶积
ACS Omega. 2022 Jul 15;7(29):25693-25704. doi: 10.1021/acsomega.2c00953. eCollection 2022 Jul 26.
2
Simulating the ionic liquid mixing with organic-solvent clarifies the mixture's SFG spectral behavior and the specific surface region originating SFG.模拟离子液体与有机溶剂的混合,阐明了混合物的和频振动光谱行为以及产生和频振动光谱的特定表面区域。
Sci Rep. 2024 Oct 5;14(1):23220. doi: 10.1038/s41598-024-74561-8.
3
Effect of electronegative atoms on π - π stacking and hydrogen bonding behavior in simple aromatic molecules - An Ab initio MD study.电负性原子对简单芳香分子中π-π堆积和氢键行为的影响——一项从头算分子动力学研究
J Mol Graph Model. 2024 Mar;127:108693. doi: 10.1016/j.jmgm.2023.108693. Epub 2023 Dec 7.
4
Ab initio molecular dynamics of liquid hydrogen chloride.液态氯化氢的从头算分子动力学
J Chem Phys. 2005 Mar 15;122(11):114512. doi: 10.1063/1.1869972.
5
Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).大分子拥挤现象:化学与物理邂逅生物学(瑞士阿斯科纳,2012年6月10日至14日)
Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2.
6
Uncovering the Properties of Dicationic Ionic Liquid Nanodroplets through Ab Initio Molecular Dynamics Simulations.通过从头算分子动力学模拟揭示双阳离子离子液体纳米液滴的性质
J Phys Chem B. 2023 Oct 26;127(42):9111-9131. doi: 10.1021/acs.jpcb.3c03585. Epub 2023 Oct 16.
7
Hydrogen bonding to multifunctional molecules: spectroscopic and ab initio investigation of 4-ethynylbenzonitrile-(water)(1-3) complexes.氢键与多功能分子的相互作用:4-乙炔基苯甲腈-(水)(1-3)配合物的光谱和从头算研究。
J Phys Chem A. 2010 Aug 19;114(32):8337-44. doi: 10.1021/jp105081f.
8
Surface Properties of -Dimethylformamide-Water Mixtures, As Seen from Computer Simulations.二甲基甲酰胺-水混合物的表面性质,从计算机模拟中观察到的。
J Phys Chem B. 2023 Feb 2;127(4):1050-1062. doi: 10.1021/acs.jpcb.2c07572. Epub 2023 Jan 18.
9
An ab initio molecular dynamics study on hydrogen bonds between water molecules.从头算分子动力学研究水分子之间的氢键。
J Chem Phys. 2012 Apr 28;136(16):164313. doi: 10.1063/1.4705371.
10
Virtual Site OPLS Force Field for Imidazolium-Based Ionic Liquids.基于咪唑鎓的离子液体的虚拟位点OPLS力场
J Phys Chem B. 2018 Mar 22;122(11):2962-2974. doi: 10.1021/acs.jpcb.7b11996. Epub 2018 Mar 9.

引用本文的文献

1
Simulating the ionic liquid mixing with organic-solvent clarifies the mixture's SFG spectral behavior and the specific surface region originating SFG.模拟离子液体与有机溶剂的混合,阐明了混合物的和频振动光谱行为以及产生和频振动光谱的特定表面区域。
Sci Rep. 2024 Oct 5;14(1):23220. doi: 10.1038/s41598-024-74561-8.

本文引用的文献

1
Green synthesis of benzonitrile using ionic liquid with multiple roles as the recycling agent.使用具有多种作用的离子液体作为循环剂绿色合成苯甲腈。
RSC Adv. 2019 Jun 5;9(31):17631-17638. doi: 10.1039/c9ra02296a. eCollection 2019 Jun 4.
2
Orientational Pair Correlations and Local Structure of Benzonitrile from Molecular Dynamics Simulations with Comparisons to Experiments.从分子动力学模拟到实验的苯甲腈的取向对关联和局部结构。
J Phys Chem B. 2021 Apr 1;125(12):3163-3177. doi: 10.1021/acs.jpcb.0c11148. Epub 2021 Mar 17.
3
Detection of the aromatic molecule benzonitrile (-CHCN) in the interstellar medium.
检测星际介质中的芳香分子苯甲腈(-CHCN)。
Science. 2018 Jan 12;359(6372):202-205. doi: 10.1126/science.aao4890.
4
The Emergent Nematic Phase in Ionic Chromonic Liquid Crystals.离子型发色团液晶中的急现向列相
J Phys Chem B. 2017 Jul 13;121(27):6691-6698. doi: 10.1021/acs.jpcb.7b03113. Epub 2017 Jul 3.
5
A new insight into π-π stacking involving remarkable orbital interactions.对涉及显著轨道相互作用的π-π堆积的新见解。
Phys Chem Chem Phys. 2016 Sep 14;18(36):25452-25457. doi: 10.1039/c6cp05485d.
6
The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin.用于蛋白质的OPLS(液体模拟优化势)势函数、环肽和克拉宾晶体的能量最小化。
J Am Chem Soc. 1988 Mar 1;110(6):1657-66. doi: 10.1021/ja00214a001.
7
N-Heterocyclic Carbene-Catalyzed Convenient Benzonitrile Assembly.N-杂环卡宾催化的方便苯甲腈组装。
Org Lett. 2016 May 6;18(9):2212-5. doi: 10.1021/acs.orglett.6b00844. Epub 2016 Apr 15.
8
GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation.GROMACS 4:高效、负载均衡和可扩展的分子模拟算法。
J Chem Theory Comput. 2008 Mar;4(3):435-47. doi: 10.1021/ct700301q.
9
Benzonitrile: Electron affinity, excited states, and anion solvation.苯甲腈:电子亲和势、激发态与阴离子溶剂化作用
J Chem Phys. 2015 Oct 7;143(13):134306. doi: 10.1063/1.4931985.
10
TRAVIS - a free analyzer and visualizer for Monte Carlo and molecular dynamics trajectories.TRAVIS - 用于蒙特卡罗和分子动力学轨迹的免费分析器和可视化器。
J Chem Inf Model. 2011 Aug 22;51(8):2007-23. doi: 10.1021/ci200217w. Epub 2011 Jul 27.