Sakhtemanian Leila, Ghatee Mohammad Hadi
Department of Chemistry, Shiraz University, Shiraz 71946, Iran.
ACS Omega. 2022 Jul 15;7(29):25693-25704. doi: 10.1021/acsomega.2c00953. eCollection 2022 Jul 26.
The content and the molecular dynamics (MD) simulation analysis here are inspired by our recent calculation on benzonitrile (BZN), whereas the present results are to expand and develop macroscopic documentation involving data verification. MD simulations of the bulk liquid BZN in the range of 293-323 K unravel the hydrogen bond (-C≡N···H) formation with strength in the order of -H ≫ -H ∼> -H. The possibility for -Hs to get involved in the formation of two bonds simultaneously confirms each having σ- and π-bonding features. Accordingly, we used vast efforts for structural analysis particularly based on the deconvolution of the corresponding complex correlation functions. Specific angle-dependent correlation functions led to the recognition of the molecular stacking with a strict anti-parallel orientation. The in-plane dimer and trimer also take part in the structural recognition. A singularity, found in the trend of the simulated temperature-dependent viscosity and diffusion coefficient of liquid BZN, is centered at about 313 K and quite fascinatingly emulates the reported experiment viscosity. An interplay between a small change in the trend of density and a large change in the corresponding viscosity is a key factor in supporting the singularity. Deconvolution of the simulation results allows attributing the singularity to structural alteration involving H-bonding of different types and extent. Approaching the range of 308-313 K, an alteration between hydrogen bond formation involving mostly -Hs and mixed -Hs + -H is possible and supports the singularity.
本文的内容及分子动力学(MD)模拟分析受到我们近期对苯甲腈(BZN)计算的启发,而目前的结果旨在扩展和发展涉及数据验证的宏观文献。对293 - 323 K范围内的本体液态BZN进行MD模拟,揭示了氢键(-C≡N···H)的形成,其强度顺序为-H ≫ -H ∼> -H。-Hs同时参与形成两个键的可能性证实了每个键都具有σ键和π键特征。因此,我们付出了巨大努力进行结构分析,特别是基于对相应复杂相关函数的反卷积。特定角度相关函数导致识别出具有严格反平行取向的分子堆积。面内二聚体和三聚体也参与了结构识别。在液态BZN模拟的温度依赖性粘度和扩散系数趋势中发现的一个奇点,集中在约313 K处,非常有趣地模拟了报道的实验粘度。密度趋势的微小变化与相应粘度的大变化之间的相互作用是支持该奇点的关键因素。对模拟结果进行反卷积可以将奇点归因于涉及不同类型和程度氢键的结构改变。接近308 - 313 K范围时,主要涉及-Hs的氢键形成与混合的-Hs + -H之间的变化是可能的,并支持了该奇点。