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拟南芥()基因特征分析。

Characteristics analysis of genes in Arabidopsis thaliana ().

机构信息

Laboratory of the Research for Molecular Mechanism and Functional Genes of Plant Stress Adaptation, College of Life Sciences, Northwest Normal University, Lanzhou, China.

出版信息

Plant Signal Behav. 2023 Dec 31;18(1):2105021. doi: 10.1080/15592324.2022.2105021. Epub 2022 Aug 2.

Abstract

Early Responsive to Dehydration (ERD) genes are rapidly induced in response to various biotic and abiotic stresses, such as bacteria, drought, light, temperature and high salt in . Sixteen ERD of () genes have been previously identified. The lengths of the coding region of the genes are 504-2838 bp. They encode 137-745 amino acids. In this study, the genes structure and promoter are analyzed through bioinformatics, and a overall function is summarized and a systematic signal pathway involving genes is mapped. AtERD9, AtERD11 and AtERD13 have the GST domain. AtERD10 and AtERD14 have the Dehyd domain. The promoters regions contain 32 light responsive elements, 23 ABA responsive elements, 5 drought responsive elements, 5 meristem expression related elements and 132 core promoter elements. The study provides a theoretical guidance for subsequent studies of genes.

摘要

早期响应脱水(ERD)基因在应对各种生物和非生物胁迫时迅速诱导,如细菌、干旱、光、温度和高盐等。先前已经鉴定出 16 个 ERD 基因。这些基因的编码区长度为 504-2838bp,编码 137-745 个氨基酸。在这项研究中,通过生物信息学分析了基因的结构和启动子,总结了其整体功能,并绘制了一个涉及基因的系统信号通路。AtERD9、AtERD11 和 AtERD13 具有 GST 结构域。AtERD10 和 AtERD14 具有 Dehyd 结构域。启动子区域包含 32 个光响应元件、23 个 ABA 响应元件、5 个干旱响应元件、5 个分生组织表达相关元件和 132 个核心启动子元件。该研究为后续基因的研究提供了理论指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe80/10730211/7ffab2ef2359/KPSB_A_2105021_F0001_OC.jpg

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