Juzhou Road Community Health Service Center, The Affiliated Rizhao People's Hospital of Jining Medical University, Rizhao, Shandong, China.
Department of Neurosurgery, The Affiliated Rizhao People's Hospital of Jining Medical University, Rizhao, Shandong, China.
Sci Rep. 2022 Aug 2;12(1):13282. doi: 10.1038/s41598-022-17510-7.
To better understand the molecular mechanisms of intracranial aneurysm (IA) pathogenesis, we used gene coexpression networks to identify hub genes and functional pathways associated with IA onset. Two Gene Expression Omnibus (GEO) datasets encompassing intracranial aneurysm tissue samples and cerebral artery control samples were included. To discover functional pathways and potential biomarkers, weighted gene coexpression network analysis was employed. Next, single-gene gene set enrichment analysis was employed to investigate the putative biological roles of the chosen genes. We also used receiver operating characteristic analysis to confirm the diagnostic results. Finally, we used a rat model to confirm the hub genes in the module of interest. The module of interest, which was designated the green module and included 115 hub genes, was the key module that was most strongly and negatively associated with IA formation. According to gene set variation analysis results, 15 immune-related pathways were significantly activated in the IA group, whereas 7 metabolic pathways were suppressed. In two GEO datasets, SLC2A12 could distinguish IAs from control samples. Twenty-nine hub genes in the green module might be biomarkers for the occurrence of cerebral aneurysms. SLC2A12 expression was significantly downregulated in both human and rat IA tissue. In the present study, we identified 115 hub genes related to the pathogenesis of IA onset and deduced their potential roles in various molecular pathways; this new information may contribute to the diagnosis and treatment of IAs. By external validation, the SLC2A12 gene may play an important role. The molecular function of SLC2A12 in the process of IA occurrence can be further studied in a rat model.
为了更好地理解颅内动脉瘤 (IA) 发病机制的分子机制,我们使用基因共表达网络来识别与 IA 发病相关的枢纽基因和功能途径。本研究纳入了两个包含颅内动脉瘤组织样本和脑动脉对照样本的基因表达综合数据库 (GEO) 数据集。为了发现功能途径和潜在的生物标志物,我们采用了加权基因共表达网络分析。接下来,我们采用单基因基因集富集分析来研究所选基因的潜在生物学作用。我们还使用了接收者操作特征分析来验证诊断结果。最后,我们使用大鼠模型来验证感兴趣模块中的枢纽基因。该感兴趣模块,即被命名为绿色模块,包含 115 个枢纽基因,是与 IA 形成最强烈和负相关的关键模块。根据基因集变异分析结果,在 IA 组中,有 15 个免疫相关途径显著激活,而 7 个代谢途径受到抑制。在两个 GEO 数据集,SLC2A12 可以将 IA 与对照样本区分开来。绿色模块中的 29 个枢纽基因可能是脑动脉瘤发生的生物标志物。SLC2A12 在人类和大鼠 IA 组织中的表达均显著下调。在本研究中,我们鉴定了 115 个与 IA 发病相关的枢纽基因,并推断了它们在各种分子途径中的潜在作用;这些新信息可能有助于 IA 的诊断和治疗。通过外部验证,SLC2A12 基因可能发挥着重要作用。可以在大鼠模型中进一步研究 SLC2A12 基因在 IA 发生过程中的分子功能。