College of Animal Science and Technology, Sichuan Agricultural University, Chengdu, 611130, Sichuan, China.
Luzhou City Department of Agricultural and Rural Affairs, Luzhou, 646000, Sichuan, China.
BMC Genomics. 2022 Aug 3;23(1):552. doi: 10.1186/s12864-022-08783-3.
The expression and biological functions of circular RNAs (circRNAs) in reproductive organs have been extensively reported. However, it is still unclear whether circRNAs are involved in sex change. To this end, RNA sequencing (RNA-seq) was performed in gonads at 5 sexual stages (ovary, early intersexual stage gonad, middle intersexual stage gonad, late intersexual stage gonad, and testis) of ricefield eel, and the expression profiles and potential functions of circRNAs were studied.
Seven hundred twenty-one circRNAs were identified, and the expression levels of 10 circRNAs were verified by quantitative real-time PCR (qRT-PCR) and found to be in accordance with the RNA-seq data, suggesting that the RNA-seq data were reliable. Then, the sequence length, category, sequence composition and the relationship between the parent genes of the circRNAs were explored. A total of 147 circRNAs were differentially expressed in the sex change process, and GO and KEGG analyses revealed that some differentially expressed (such as novel_circ_0000659, novel_circ_0004005 and novel_circ_0005865) circRNAs were closely involved in sex change. Furthermore, expression pattern analysis demonstrated that both circSnd1 and foxl2 were downregulated in the process of sex change, which was contrary to mal-miR-135b. Finally, dual-luciferase reporter assay and RNA immunoprecipitation showed that circSnd1 and foxl2 can combine with mal-miR-135b and mal-miR-135c. These data revealed that circSnd1 regulates foxl2 expression in the sex change of ricefield eel by acting as a sponge of mal-miR-135b/c.
Our results are the first to demonstrate that circRNAs have potential effects on sex change in ricefield eel; and circSnd1 could regulate foxl2 expression in the sex change of ricefield eel by acting as a sponge of mal-miR-135b/c. These data will be useful for enhancing our understanding of sequential hermaphroditism and sex change in ricefield eel or other teleosts.
环状 RNA(circRNAs)在生殖器官中的表达和生物学功能已得到广泛报道。然而,circRNAs 是否参与性别转变仍不清楚。为此,我们对黄鳝 5 个性阶段(卵巢、早期雌雄同体阶段性腺、中期雌雄同体阶段性腺、晚期雌雄同体阶段性腺和精巢)的性腺进行了 RNA 测序(RNA-seq),研究了 circRNAs 的表达谱和潜在功能。
鉴定出 721 个 circRNAs,通过定量实时 PCR(qRT-PCR)验证了 10 个 circRNAs 的表达水平,发现与 RNA-seq 数据一致,表明 RNA-seq 数据可靠。然后,探索了 circRNAs 的序列长度、类别、序列组成和与亲本基因的关系。在性别转变过程中,共有 147 个 circRNAs 差异表达,GO 和 KEGG 分析表明,一些差异表达的 circRNAs(如 novel_circ_0000659、novel_circ_0004005 和 novel_circ_0005865)与性别转变密切相关。此外,表达模式分析表明,circSnd1 和 foxl2 在性别转变过程中均下调,这与 mal-miR-135b 相反。最后,双荧光素酶报告基因检测和 RNA 免疫沉淀实验表明,circSnd1 可以作为 mal-miR-135b/c 的海绵,与 foxl2 结合。这些数据表明,circSnd1 通过作为 mal-miR-135b/c 的海绵调节黄鳝性别转变中 foxl2 的表达。
我们的研究结果首次表明 circRNAs 可能对黄鳝的性别转变有潜在影响;circSnd1 可以作为 mal-miR-135b/c 的海绵,调节黄鳝性别转变中 foxl2 的表达。这些数据将有助于我们更好地理解黄鳝或其他硬骨鱼的连续雌雄同体和性别转变。