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鞘翅目叩甲科(多食亚目:树猎甲族:锯胸甲族)长足叩甲属 Pectocera sp. 的完整线粒体基因组及其系统发育意义。

Complete mitochondrial genome of Pectocera sp. (Elateridae: Dendrometrinae: Oxynopterini) and its phylogenetic implications.

机构信息

School of Ecology and Environment, Northwestern Polytechnical University, Xi'an, Shaanxi, China.

State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan, China.

出版信息

Arch Insect Biochem Physiol. 2022 Sep;111(1):e21957. doi: 10.1002/arch.21957. Epub 2022 Aug 7.

Abstract

The Elateridae family (click beetles) represents a highly diverse lineage that possesses a specialized clicking mechanism to startle predators. At present, however, phylogenetic relationships, especially among recognized subfamilies, remain contentious. Mitochondrial genomes (mitogenomes) can help resolve previously intractable phylogenetic relationships using morphological or limited molecular data. Here, we report the complete mitogenome of Pectocera sp. (Elateridae: Dendrometrinae: Oxynopterini), which was 15,962 bp in length and showed a typical gene number and order as most beetle mitogenomes, including 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 noncoding control region (AT-rich region). Comparative genomic analyses showed a high degree of feature similarity among Pectocera sp. and other click beetles. Evolutionary analysis of all PCGs based on the nonsynonymous/synonymous substitution rate ratio (ω) indicated that cox1 and atp8 exhibited the lowest and highest evolutionary rates, respectively, and that the evolutionary rates of all PCGs, except for cox3, nad2, and nad3, were lower than the average ω of click beetles. Phylogenetic analyses based on concatenated and coalescent approaches indicated that Pectocera sp. was sister to Campsosternus auratus in the same tribe (Oxynopterini) with high support. This study offers insight into the mitogenomic basis of Pectocera sp. and provides an important data resource for exploring the taxonomy, phylogeny, and evolution of click beetles.

摘要

叩头虫科(叩头虫)是一个高度多样化的家族,拥有一种专门的咔哒声机制来惊吓捕食者。然而,目前的系统发育关系,尤其是已确认的亚科之间的关系,仍然存在争议。线粒体基因组(mitogenome)可以利用形态学或有限的分子数据来帮助解决以前难以解决的系统发育关系。在这里,我们报告了 Pectocera sp.(叩头虫科:Dendrometrinae:Oxynopterini)的完整线粒体基因组,其长度为 15962bp,表现出与大多数甲虫线粒体基因组相同的典型基因数量和顺序,包括 13 个蛋白质编码基因(PCGs)、22 个转移 RNA 基因、2 个核糖体 RNA 基因和 1 个非编码控制区(富含 AT 区)。比较基因组分析表明,Pectocera sp.和其他叩头虫之间具有高度的特征相似性。基于非同义/同义替代率比(ω)对所有 PCGs 的进化分析表明,cox1 和 atp8 分别表现出最低和最高的进化率,除了 cox3、nad2 和 nad3 之外,所有 PCGs 的进化率均低于叩头虫的平均 ω。基于连锁和合并方法的系统发育分析表明,Pectocera sp.与同一部落(Oxynopterini)的 Campsosternus auratus 是姐妹关系,支持度很高。本研究为 Pectocera sp.的线粒体基因组基础提供了深入了解,并为探索叩头虫的分类学、系统发育和进化提供了重要的数据资源。

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