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PLoS One. 2024 Jul 3;19(7):e0305108. doi: 10.1371/journal.pone.0305108. eCollection 2024.

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CaFÉ: A Sensitive, Low-Cost Filtration Method for Detecting Polioviruses and Other Enteroviruses in Residual Waters.CaFÉ:一种用于检测残留水中脊髓灰质炎病毒和其他肠道病毒的灵敏、低成本过滤方法。
Front Environ Sci. 2022 Jul 4;10. doi: 10.3389/fenvs.2022.914387.
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VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.VPipe:一个用于病毒下一代测序数据组装和管理的自动化生物信息学平台。
Microbiol Spectr. 2022 Apr 27;10(2):e0256421. doi: 10.1128/spectrum.02564-21. Epub 2022 Mar 2.
3
Environmental Surveillance for Polioviruses in Haïti (2017-2019): The Dynamic Process for the Establishment and Monitoring of Sampling Sites.海地脊髓灰质炎病毒的环境监测(2017-2019 年):建立和监测采样点的动态过程。
Viruses. 2021 Mar 18;13(3):505. doi: 10.3390/v13030505.
4
Scaling read aligners to hundreds of threads on general-purpose processors.在通用处理器上将读取对齐器扩展到数百个线程。
Bioinformatics. 2019 Feb 1;35(3):421-432. doi: 10.1093/bioinformatics/bty648.
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High-Throughput Next-Generation Sequencing of Polioviruses.脊髓灰质炎病毒的高通量下一代测序
J Clin Microbiol. 2017 Feb;55(2):606-615. doi: 10.1128/JCM.02121-16. Epub 2016 Dec 7.
6
Enteroviruses in the early 21st century: new manifestations and challenges.21世纪初的肠道病毒:新表现与挑战
Curr Opin Pediatr. 2016 Feb;28(1):107-13. doi: 10.1097/MOP.0000000000000303.
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A metagenomics and case-control study to identify viruses associated with bovine respiratory disease.一项用于鉴定与牛呼吸道疾病相关病毒的宏基因组学和病例对照研究。
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An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data.一种可显著改进从宏基因组新一代测序数据中进行微生物基因组从头组装的整合策略。
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9
High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage.未经处理的污水中存在多种来源的已知和新型 RNA 和 DNA 病毒。
J Virol. 2012 Nov;86(22):12161-75. doi: 10.1128/JVI.00869-12. Epub 2012 Aug 29.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
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2019年至2021年危地马拉环境污水中16株肠道病毒分离株的基因组序列

Genome Sequences of 16 Enterovirus Isolates from Environmental Sewage in Guatemala, 2019 to 2021.

作者信息

Harrington Chelsea, Sayyad Leanna, Castro Christina, Hill Jamaica, Jeffries-Miles Stacey, Belgasmi Hanen, Rey-Benito Gloria, Mendoza Prillwitz María Linda, Castillo Signor Leticia, Gerloff Nancy

机构信息

Division of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.

Cherokee Nation Assurance, Atlanta, Georgia, USA.

出版信息

Microbiol Resour Announc. 2022 Sep 15;11(9):e0056222. doi: 10.1128/mra.00562-22. Epub 2022 Aug 11.

DOI:10.1128/mra.00562-22
PMID:35950869
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9476903/
Abstract

Enteroviruses can cause human infectious disease. We report 16 near-complete genome sequences of enteroviruses that were isolated through environmental surveillance of wastewater in Guatemala.

摘要

肠道病毒可引起人类传染病。我们报告了通过对危地马拉废水进行环境监测分离出的16个肠道病毒的近完整基因组序列。