Ministry of Education Key Laboratory of Intelligent Computation and Signal Processing, Information Materials and Intelligent Sensing Laboratory of Anhui Province, School of Electronics and Information Engineering, Anhui University, Hefei, Anhui 230000, China.
Tencent Jarvis Lab, Shenzhen, Guangdong 518020, China.
Bioinformatics. 2022 Sep 30;38(19):4654-4655. doi: 10.1093/bioinformatics/btac549.
Recent whole-brain mapping projects are collecting increasingly larger sets of high-resolution brain images using a variety of imaging, labeling and sample preparation techniques. Both mining and analysis of these data require reliable and robust cross-modal registration tools. We recently developed the mBrainAligner, a pipeline for performing cross-modal registration of the whole mouse brain. However, using this tool requires scripting or command-line skills to assemble and configure the different modules of mBrainAligner for accommodating different registration requirements and platform settings. In this application note, we present mBrainAligner-Web, a web server with a user-friendly interface that allows to configure and run mBrainAligner locally or remotely across platforms.
mBrainAligner-Web is available at http://mbrainaligner.ahu.edu.cn/ with source code at https://github.com/reaneyli/mBrainAligner-web.
Supplementary data are available at Bioinformatics online.
最近的全脑图谱绘制项目正在使用各种成像、标记和样本制备技术，收集越来越多的高分辨率脑图像数据集。这些数据的挖掘和分析都需要可靠和稳健的跨模态配准工具。我们最近开发了 mBrainAligner，这是一个用于全脑跨模态配准的流水线。然而，使用此工具需要脚本编写或命令行技能来组装和配置 mBrainAligner 的不同模块，以适应不同的配准要求和平台设置。在本应用说明中，我们介绍了 mBrainAligner-Web，这是一个带有用户友好界面的网络服务器，允许在本地或远程跨平台配置和运行 mBrainAligner。
mBrainAligner-Web 可在 http://mbrainaligner.ahu.edu.cn/ 上获取，其源代码可在 https://github.com/reaneyli/mBrainAligner-web 上找到。
补充数据可在 Bioinformatics 在线获得。
