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一种基于深度学习的子宫平滑肌肉瘤组织病理学有丝分裂识别新方法及数据集

A Novel Deep Learning-Based Mitosis Recognition Approach and Dataset for Uterine Leiomyosarcoma Histopathology.

作者信息

Zehra Talat, Anjum Sharjeel, Mahmood Tahir, Shams Mahin, Sultan Binish Arif, Ahmad Zubair, Alsubaie Najah, Ahmed Shahzad

机构信息

Department of Pathology, Jinnah Sindh Medical University, Karachi 75510, Pakistan.

Department of Architectural Engineering, Chung-Ang University, Seoul 06974, Korea.

出版信息

Cancers (Basel). 2022 Aug 3;14(15):3785. doi: 10.3390/cancers14153785.

Abstract

Uterine leiomyosarcoma (ULMS) is the most common sarcoma of the uterus, It is aggressive and has poor prognosis. Its diagnosis is sometimes challenging owing to its resemblance by benign smooth muscle neoplasms of the uterus. Pathologists diagnose and grade leiomyosarcoma based on three standard criteria (i.e., mitosis count, necrosis, and nuclear atypia). Among these, mitosis count is the most important and challenging biomarker. In general, pathologists use the traditional manual counting method for the detection and counting of mitosis. This procedure is very time-consuming, tedious, and subjective. To overcome these challenges, artificial intelligence (AI) based methods have been developed that automatically detect mitosis. In this paper, we propose a new ULMS dataset and an AI-based approach for mitosis detection. We collected our dataset from a local medical facility in collaboration with highly trained pathologists. Preprocessing and annotations are performed using standard procedures, and a deep learning-based method is applied to provide baseline accuracies. The experimental results showed 0.7462 precision, 0.8981 recall, and 0.8151 F1-score. For research and development, the code and dataset have been made publicly available.

摘要

子宫平滑肌肉瘤(ULMS)是子宫最常见的肉瘤,具有侵袭性且预后较差。由于其与子宫良性平滑肌肿瘤相似,其诊断有时具有挑战性。病理学家根据三个标准(即有丝分裂计数、坏死和核异型性)对平滑肌肉瘤进行诊断和分级。其中,有丝分裂计数是最重要且最具挑战性的生物标志物。一般来说,病理学家使用传统的手工计数方法来检测和计数有丝分裂。这个过程非常耗时、繁琐且主观。为了克服这些挑战,已经开发了基于人工智能(AI)的方法来自动检测有丝分裂。在本文中,我们提出了一个新的ULMS数据集和一种基于AI的有丝分裂检测方法。我们与训练有素的病理学家合作,从当地医疗机构收集了我们的数据集。使用标准程序进行预处理和注释,并应用基于深度学习的方法来提供基线准确率。实验结果显示精确率为0.7462,召回率为0.8981,F1分数为0.8151。为了进行研发,代码和数据集已公开提供。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c97/9367529/fbf04e35ba75/cancers-14-03785-g001.jpg

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