基于网络药理学-分子靶标探讨补肾活血方治疗骨关节炎的作用机制。
Mechanisms of the Bushen Huoxue formula in the treatment of osteoarthritis based on network pharmacology-molecular targets.
机构信息
Department of Acupuncture and Tuina, Changchun University of Chinese Medicine, Changchun, China.
Department of Tuina, the Affiliated Hospital to Changchun University of Chinese Medicine, Changchun, China.
出版信息
Medicine (Baltimore). 2022 Aug 12;101(32):e29345. doi: 10.1097/MD.0000000000029345.
BACKGROUND
Osteoarthritis is a common degenerative disease with a high incidence, high disability rate, and poor prognosis. Clinical studies have shown that Bushen Huoxue formula can relieve joint swelling and pain and improve limb function and joint mobility, but there is a lack of high-quality scientific basis. Using network pharmacology and molecular docking technology to study the mechanism of Bushen Huoxue formula in the treatment of osteoarthritis.
METHODS
First, the active ingredients and corresponding target predictions of the formula were obtained through the Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform and the China National Knowledge Infrastructure. Meanwhile, the osteoarthritis disease targets were obtained through the genome annotation database platform (GeneCards) and the DrugBank database, and the target proteins obtained above were standardized using the Uniprot (https://www.uniprot.org) database standardization of names. Then, the Venn diagram was created by taking the intersection of the active ingredient and the target of the disease, and the "active ingredient-target" network was constructed and analyzed using Cytoscape 3.7.2 software. At the same time, the intersecting targets were imported into the Search Tool for the Retrieval of Interaction Gene/Proteins database to build a protein-protein interaction network and to screen the core targets; the intersecting targets were visualized by using the Database for Annotation, Visualization and Integrated Discovery 6.8 database for gene ontology functional analysis and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis, and construct the "active ingredient-target-pathway" network. Finally, the main active ingredients of the formula for tonifying the kidney and invigorating the blood were validated by molecular docking with the core targets.
RESULTS
A total of 194 active ingredients and 365 targets of the Bushen Huoxue formula were collected, 776 targets for osteoarthritis diseases and 96 targets for the intersection of active ingredients and diseases. The Kyoto Encyclopedia of Genes and Genomes enrichment analysis yielded 104 relevant pathways, including tumor necrosis factor signaling pathways, cancer signaling pathways, nucleotide-binding oligomerization domain-like receptor signaling pathways, Toll-like receptors signaling pathways, and osteoclast differentiation, apoptosis, T-cell receptor signaling pathway, and other related pathways. The molecular docking results showed good binding of the main active ingredients to the core targets.
CONCLUSION
This study shows that the treatment of osteoarthritis involves multicomponent, multitarget, and multipathway processes. The mechanism of anti-inflammatory, antioxidant, inhibition of cartilage matrix degradation, and reduction of subchondral bone destruction may be an important mechanism for the therapeutic effect.
背景
骨关节炎是一种常见的退行性疾病,发病率高、致残率高、预后差。临床研究表明,补肾活血方可以缓解关节肿胀和疼痛,改善肢体功能和关节活动度,但缺乏高质量的科学依据。本研究采用网络药理学和分子对接技术研究补肾活血方治疗骨关节炎的作用机制。
方法
首先,通过中药系统药理学数据库和分析平台以及中国知网获取方中活性成分及相应的靶标预测;同时,通过基因组注释数据库平台(GeneCards)和 DrugBank 数据库获取骨关节炎疾病靶标,将上述获得的靶标蛋白通过 Uniprot(https://www.uniprot.org)数据库标准化名称进行标准化。然后,取活性成分与疾病靶标交集制作 Venn 图,采用 Cytoscape 3.7.2 软件构建和分析“活性成分-靶标”网络。同时,将交集靶标导入 Search Tool for the Retrieval of Interaction Gene/Proteins 数据库构建蛋白-蛋白相互作用网络,并筛选核心靶标;将交集靶标导入数据库 for Annotation, Visualization and Integrated Discovery 6.8 进行基因本体论功能分析和京都基因与基因组百科全书(KEGG)通路富集分析,构建“活性成分-靶标-通路”网络。最后,采用分子对接验证方中补肾活血的主要活性成分与核心靶标结合情况。
结果
共收集补肾活血方 194 个活性成分和 365 个靶标,776 个骨关节炎疾病靶标和 96 个活性成分与疾病靶标交集。KEGG 通路富集分析得到 104 条相关通路,包括肿瘤坏死因子信号通路、癌症信号通路、核苷酸结合寡聚化结构域样受体信号通路、Toll 样受体信号通路、破骨细胞分化、凋亡、T 细胞受体信号通路等相关通路。分子对接结果显示主要活性成分与核心靶标结合良好。
结论
本研究表明,补肾活血方治疗骨关节炎涉及多成分、多靶标、多途径的过程。其抗炎、抗氧化、抑制软骨基质降解、减少软骨下骨破坏可能是其发挥治疗作用的重要机制。
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