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连锁图谱揭示了秀丽隐杆线虫生长差异的潜在基因座。

Linkage mapping reveals loci that underlie differences in Caenorhabditis elegans growth.

机构信息

Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA.

Interdisciplinary Biological Sciences Program, Northwestern University, Evanston, IL 60208, USA.

出版信息

G3 (Bethesda). 2022 Sep 30;12(10). doi: 10.1093/g3journal/jkac207.

Abstract

Growth rate and body size are complex traits that contribute to the fitness of organisms. The identification of loci that underlie differences in these traits provides insights into the genetic contributions to development. Leveraging Caenorhabditis elegans as a tractable metazoan model for quantitative genetics, we can identify genomic regions that underlie differences in growth. We measured postembryonic growth of the laboratory-adapted wild-type strain (N2) and a wild strain from Hawaii (CB4856) and found differences in body size. Using linkage mapping, we identified three distinct quantitative trait loci (QTL) on chromosomes IV, V, and X that are associated with variation in body growth. We further examined these growth-associated quantitative trait loci using chromosome substitution strains and near-isogenic lines and validated the chromosome X quantitative trait loci. In addition, we generated a list of candidate genes for the chromosome X quantitative trait loci. These genes could potentially contribute to differences in animal growth and should be evaluated in subsequent studies. Our work reveals the genetic architecture underlying animal growth variation and highlights the genetic complexity of growth in Caenorhabditis elegans natural populations.

摘要

生长速度和体型是复杂的特征,它们对生物体的适应性有贡献。鉴定这些特征差异背后的基因座可以深入了解遗传对发育的贡献。利用秀丽隐杆线虫作为一种可用于定量遗传学的易于处理的后生动物模型,我们可以鉴定出导致生长差异的基因组区域。我们测量了实验室适应的野生型菌株(N2)和来自夏威夷的野生菌株(CB4856)的胚胎后生长情况,发现体型存在差异。通过连锁图谱分析,我们在染色体 IV、V 和 X 上鉴定出三个不同的与身体生长变化相关的数量性状基因座(QTL)。我们进一步使用染色体替换菌株和近等基因系来研究这些与生长相关的数量性状基因座,并验证了染色体 X 上的数量性状基因座。此外,我们为染色体 X 上的数量性状基因座生成了一份候选基因列表。这些基因可能对动物生长的差异有贡献,应该在后续研究中进行评估。我们的工作揭示了动物生长变化背后的遗传结构,并强调了秀丽隐杆线虫自然种群中生长的遗传复杂性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f54c/9526057/d496fbcf499d/jkac207f1.jpg

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