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经计算机功能分析支持,一种新型 GATA6 基因致病变异是家族性扩张型心肌病的致病原因。

A novel causative functional mutation in GATA6 gene is responsible for familial dilated cardiomyopathy as supported by in silico functional analysis.

机构信息

Department of Medical Genetics and Molecular Medicine, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran.

Biotechnology Department, Iranian Research Organization for Science and Technology (IROST), Tehran, Iran.

出版信息

Sci Rep. 2022 Aug 12;12(1):13752. doi: 10.1038/s41598-022-13993-6.

DOI:10.1038/s41598-022-13993-6
PMID:35962153
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9374661/
Abstract

Dilated cardiomyopathy (DCM), one of the most common types of cardiomyopathies has a heterogeneous nature and can be seen in Mendelian forms. Next Generation Sequencing is a powerful tool for identifying novel variants in monogenic disorders. We used whole-exome sequencing (WES) and Sanger sequencing techniques to identify the causative mutation of DCM in an Iranian pedigree. We found a novel variant in the GATA6 gene, leading to substituting Histidine by Tyrosine at position 329, observed in all affected family members in the pedigree, whereas it was not established in any of the unaffected ones. We hypothesized that the H329Y mutation may be causative for the familial pattern of DCM in this family. The predicted models of GATA6 and H329Y showed the high quality according to PROCHECK and ERRAT. Nonetheless, simulation results revealed that the protein stability decreased after mutation, while the flexibility may have been increased. Hence, the mutation led to the increased compactness of GATA6. Overall, these data indicated that the mutation could affect the protein structure, which may be related to the functional impairment of GATA6 upon H329Y mutation, likewise their involvement in pathologies. Further functional investigations would help elucidating the exact mechanism.

摘要

扩张型心肌病(DCM)是最常见的心肌病类型之一,具有异质性,可呈孟德尔遗传形式。新一代测序技术是鉴定单基因疾病中新型变异的有力工具。我们使用外显子组测序(WES)和 Sanger 测序技术,在一个伊朗家系中鉴定了 DCM 的致病突变。我们在 GATA6 基因中发现了一个新的变异,导致第 329 位的组氨酸被酪氨酸取代,在该家系中所有受影响的家族成员中都观察到了这种变异,而在未受影响的家族成员中则没有。我们假设 H329Y 突变可能是该家族 DCM 家族模式的致病原因。根据 PROCHECK 和 ERRAT,GATA6 和 H329Y 的预测模型显示出高质量。尽管如此,模拟结果表明突变后蛋白质稳定性降低,而柔韧性可能增加。因此,突变导致 GATA6 的紧凑度增加。总的来说,这些数据表明该突变可能影响蛋白质结构,这可能与 H329Y 突变后 GATA6 的功能损伤有关,同样也与它们在病理学中的参与有关。进一步的功能研究将有助于阐明确切的机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a33/9374661/9a2990c6abab/41598_2022_13993_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a33/9374661/ab7e5b681cdc/41598_2022_13993_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a33/9374661/6ec0ff002e14/41598_2022_13993_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a33/9374661/0ceb28489988/41598_2022_13993_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a33/9374661/9a2990c6abab/41598_2022_13993_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a33/9374661/ab7e5b681cdc/41598_2022_13993_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a33/9374661/6ec0ff002e14/41598_2022_13993_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a33/9374661/0ceb28489988/41598_2022_13993_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a33/9374661/9a2990c6abab/41598_2022_13993_Fig4_HTML.jpg

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