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[植物基因组测序:现代技术与育种新机遇]

[Plant Genome Sequencing: Modern Technologies and Novel Opportunities for Breeding].

作者信息

Dmitriev A A, Pushkova E N, Melnikova N V

机构信息

Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia.

出版信息

Mol Biol (Mosk). 2022 Jul-Aug;56(4):531-545. doi: 10.31857/S0026898422040048.

Abstract

The investigation of plant genomes is of great importance for basic research and practical breeding. In 1977, F. Sanger proposed a DNA sequencing method, which allowed the complete sequences of a number of genomes to be determined. Then high-throughput and cost-effective next-generation/second-generation sequencing methods, producing up to billions of short reads, made it possible to sequence genomes of a significant number of species and provided a breakthrough in plant genetic studies. Finally, third-generation sequencing technologies allowed the determination of single-molecule sequences up to a million nucleotides in length, which is key for high-quality genome assemblies. An important task is to obtain a pan-genome, which includes an entire set of nucleotide sequences presented in various genotypes of the same species. The sequencing of plant genomes made it possible to assess intraspecific polymorphism, identify key genes influencing the formation of significant features, and develop molecular markers of economically valuable traits and this has become the basis for the development of marker-assisted and genomic selection. This review provides information on the latest advances in sequencing technologies and the assembly of plant genomes, as well as the opportunities that they open up for basic and applied works.

摘要

植物基因组研究对于基础研究和实际育种具有重要意义。1977年,F. 桑格提出了一种DNA测序方法,该方法使许多基因组的完整序列得以确定。随后,高通量且经济高效的新一代/第二代测序方法能够产生多达数十亿条短读长序列,使得对大量物种的基因组进行测序成为可能,并在植物遗传学研究方面取得了突破。最后,第三代测序技术能够测定长度达一百万个核苷酸的单分子序列,这对于高质量的基因组组装至关重要。一项重要任务是获得泛基因组,它包括同一物种不同基因型中呈现的全套核苷酸序列。植物基因组测序使得评估种内多态性、鉴定影响重要性状形成的关键基因以及开发具有经济价值性状的分子标记成为可能,这已成为标记辅助选择和基因组选择发展的基础。本综述提供了有关测序技术和植物基因组组装的最新进展,以及它们为基础研究和应用工作带来的机遇的信息。

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