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系统发育基因组学和比较基因组分析支持创建新科伊格纳茨希内氏菌科(Ignatzschineriaceae fam. nov.),该科在心杆菌目(Cardiobacteriales)内包含伊格纳茨希内氏菌属(Ignatzschineria)和沃尔法尔蒂单胞菌属(Wohlfahrtiimonas)。

Phylogenomics and comparative genomic analyses support the creation of the novel family Ignatzschineriaceae fam. nov. comprising the genera Ignatzschineria and Wohlfahrtiimonas within the order Cardiobacteriales.

作者信息

Montecillo Jake Adolf V

机构信息

Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk 38541, Republic of Korea.

出版信息

Res Microbiol. 2023 Jan-Feb;174(1-2):103988. doi: 10.1016/j.resmic.2022.103988. Epub 2022 Aug 13.

Abstract

The genera Ignatzschineria and Wohlfahrtiimonas were originally classified as members of the family Xanthomonadaceae, order Xanthomonadales of the class Gammaproteobacteria. With the recent taxonomic revisions in the order Xanthomonadales, the two genera were left unclassified in both family and order level. As members of these genera were considered emerging pathogens, their proper classification is therefore relevant. Here, a phylogenomics and comparative genomic approach was used to ascertain the taxonomic position of the two genera. Result showed that the members of the two genera formed a highly supported monophyletic clade with the members of the order Cardiobacteriales. This close affiliation was further supported by the results of the comparative analysis of the 16S rRNA sequence similarity values. The comparative analyses of the 16S rRNA sequence similarity and average amino acid identity values also implied that the two genera represent a single novel family. Conserved signature indels (CSIs) in seven protein sequences were exclusively shared by the members of the novel family. In addition, four CSIs were also found to be useful in delimiting members of the two genera at the genus level. To accommodate the two genera in a single family within the order Cardiobacteriales, the name Ignatzschineriaceae fam. nov. is proposed.

摘要

伊格纳茨希内氏菌属(Ignatzschineria)和沃氏单胞菌属(Wohlfahrtiimonas)最初被归类为γ-变形菌纲黄单胞菌目(Xanthomonadales)黄单胞菌科(Xanthomonadaceae)的成员。随着黄单胞菌目最近的分类修订,这两个属在科和目级别均未被分类。由于这些属的成员被认为是新兴病原体,因此它们的正确分类具有重要意义。在此,采用系统发育基因组学和比较基因组学方法来确定这两个属的分类地位。结果表明,这两个属的成员与心杆菌目(Cardiobacteriales)的成员形成了一个得到高度支持的单系分支。16S rRNA序列相似性值的比较分析结果进一步支持了这种密切关系。16S rRNA序列相似性和平均氨基酸同一性值的比较分析也表明,这两个属代表一个单一的新科。新科成员仅共享七个蛋白质序列中的保守特征插入/缺失(CSIs)。此外,还发现四个CSIs在属水平上区分这两个属的成员时很有用。为了将这两个属归入心杆菌目内的一个科,提议将其命名为伊格纳茨希内氏菌科(Ignatzschineriaceae fam. nov.)。

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