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评估环境 DNA(eDNA)在水中人类 DNA 检测中的应用。

Assessing the use of environmental DNA (eDNA) as a tool in the detection of human DNA in water.

机构信息

School of Life and Environmental Sciences, Deakin University, Geelong, Vic, Australia.

Centre for Regional and Rural Futures (CeRRF), Deakin University, Geelong, Vic, Australia.

出版信息

J Forensic Sci. 2022 Nov;67(6):2299-2307. doi: 10.1111/1556-4029.15124. Epub 2022 Aug 16.

Abstract

Environmental DNA (eDNA) is a highly sensitive and cost-effective tool that is increasingly being applied to studies of biodiversity and species detection. This non-invasive method relies on the collection of environmental samples that contain genetic material being shed into surrounding environment by the target organism/s. While forensic science has a long history of using molecular tools for collecting DNA from the environment, the detection of human DNA from environmental water samples has been limited. This study investigated the detection and degradation rates of human eDNA in water samples under controlled laboratory conditions. Using a human-specific qPCR assay targeting the ND1 region of human mitochondrial DNA, eDNA degradation over time in water spiked with human blood was assessed. Recovery of nuclear DNA was investigated by determining if routine DNA short tandem repeat (STR) profiles of the blood source could be generated. Results demonstrated that human eDNA remains detectable for up to 11 days under laboratory conditions in environmental water and up to 35 days in distilled water. Partial STR profiles could be recovered from environmental water only up to 24 h, while, in distilled water, partial profiles continued to be recovered up to 840 h. These findings demonstrate that sampling human eDNA from aquatic samples can provide reliable human DNA detection within relatively short time windows, assisting law enforcement agencies by providing information about the potential time an individual may have been present in an area or assisting in the detection and location of a body or remains in aquatic environments.

摘要

环境 DNA(eDNA)是一种高度敏感且经济高效的工具,越来越多地应用于生物多样性和物种检测研究。这种非侵入性方法依赖于收集环境样本,其中包含目标生物/生物体释放到周围环境中的遗传物质。虽然法医学长期以来一直使用分子工具从环境中收集 DNA,但从环境水样中检测人类 DNA 的能力一直受到限制。本研究在受控实验室条件下调查了人类 eDNA 在水样中的检测和降解率。使用针对人线粒体 DNA 的 ND1 区域的人类特异性 qPCR 测定法,评估了在添加人血的水样中 eDNA 随时间的降解情况。通过确定是否可以生成血液来源的常规 DNA 短串联重复(STR)图谱来研究核 DNA 的回收情况。结果表明,在环境水中,人类 eDNA 在实验室条件下可检测长达 11 天,在蒸馏水中可检测长达 35 天。仅在 24 小时内才能从环境水中回收部分 STR 图谱,而在蒸馏水中,部分图谱仍可回收长达 840 小时。这些发现表明,从水样中采集人类 eDNA 可以在相对较短的时间窗口内提供可靠的人类 DNA 检测,通过提供有关个人可能在某个区域存在的潜在时间的信息,为执法机构提供帮助,或者有助于在水生环境中检测和定位尸体或遗骸。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1567/9804157/7cfe8596b923/JFO-67-2299-g001.jpg

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