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中国北京 2020 年由 HAdV-55 引起的急性呼吸道疾病暴发。

An outbreak of acute respiratory disease caused by HAdV-55 in Beijing, China, 2020.

机构信息

Chinese PLA Center for Disease Control and Prevention, Beijing, Fengtai District, China.

Center for Disease Control and Prevention of Central Theater Command, Beijing, Shijingshan District, China.

出版信息

J Med Virol. 2022 Dec;94(12):6111-6115. doi: 10.1002/jmv.28074. Epub 2022 Aug 30.

Abstract

Human adenoviruses (HAdVs) can cause acute respiratory diseases (ARDs) worldwide, and HAdV-55 is a reemergent pathogen in recent years. In the study, we investigated an outbreak of ARD at a school due to HAdV-55 in Beijing, China, during the early outbreak of coronavirus disease 2019 (COVID-19). The epidemic prevention team was dispatched to the school to collect epidemiologic data and nasopharyngeal samples. Then, real-time reverse transcription polymerase chain reaction (PCR) and multiplex PCR assays were used to detect severe acute respiratory syndrome coronavirus 2 and other respiratory pathogens, respectively. One representative HAdV-55 isolate was selected and submitted for whole-genome sequencing using a MiSeq system and the whole-genome phylogenetic tree was conducted based on the maximum likelihood method. The outbreak lasted from January 27 to February 6, 2020, and 108 students developed fever, among whom 60 (55.56%) cases were diagnosed with HAdV-55 infection in the laboratory using real-time PCR and 56 cases were hospitalized. All the confirmed cases had a fever and 11 cases (18.33%) presented with a fever above 39°C. Other main clinical symptoms included sore throat (43.33%) and headache (43.33%). We obtained and assembled the full genome of one isolate, BJ-446, with 34 761 nucleotides in length. HAdV-55 isolate BJ-446 was 99.85% identical to strain QS-DLL, which was the first HAdV-55 strain in China isolated from an ARD outbreak in Shanxi in 2006. One and four amino acid mutations were observed in the hexon gene and the coding region of L2 pV 40.1 kDa protein, respectively. We identified the first HAdV-55 infection associated with the ARD outbreak in Beijing since the emergence of COVID-19. The study suggests that improved surveillance of HAdV is needed, although COVID-19 is still prevalent in the world.

摘要

人类腺病毒(HAdV)可在全球范围内引起急性呼吸道疾病(ARD),而 HAdV-55 是近年来重新出现的病原体。在这项研究中,我们调查了中国北京 2019 年冠状病毒病(COVID-19)早期爆发期间一所学校因 HAdV-55 引起的 ARD 暴发。疫情防控小组被派往学校收集流行病学数据和鼻咽样本。然后,使用实时逆转录聚合酶链反应(PCR)和多重 PCR 检测分别检测严重急性呼吸综合征冠状病毒 2 和其他呼吸道病原体。选择了一个代表性的 HAdV-55 分离株,并使用 MiSeq 系统进行全基因组测序,并基于最大似然法构建全基因组系统发育树。暴发持续了 2020 年 1 月 27 日至 2 月 6 日,有 108 名学生出现发热,其中 60 例(55.56%)通过实时 PCR 确诊为 HAdV-55 感染,56 例住院。所有确诊病例均有发热,其中 11 例(18.33%)发热超过 39°C。其他主要临床症状包括咽痛(43.33%)和头痛(43.33%)。我们获得并组装了一个分离株 BJ-446 的全长基因组,长度为 34761 个核苷酸。HAdV-55 分离株 BJ-446 与 2006 年中国山西 ARD 暴发中分离的第一株 HAdV-55 株 QS-DLL 同源性为 99.85%。在六邻体基因和编码 L2 pV 40.1 kDa 蛋白的区域中分别观察到一个和四个氨基酸突变。我们鉴定了 COVID-19 出现以来北京首例与 ARD 暴发相关的 HAdV-55 感染。研究表明,尽管 COVID-19 在全球仍很流行,但需要加强对 HAdV 的监测。

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