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中国北京某培训基地发生的由人腺病毒 B55 型引起的急性呼吸道感染暴发。

An outbreak of acute respiratory infection at a training base in Beijing, China due to human adenovirus type B55.

机构信息

Institute for Infectious Disease and Endemic Disease Control, Beijing Center for Disease Prevention and Control, Beijing Research Center for Preventive Medicine, 16# He Ping Li Middle Street, Dongcheng District, Beijing, 100013, China.

Daxing District Center for Disease Prevention and Control, Beijing, 102600, China.

出版信息

BMC Infect Dis. 2020 Jul 23;20(1):537. doi: 10.1186/s12879-020-05258-2.

Abstract

BACKGROUND

Twelve students experienced symptoms of acute respiratory infection (ARI) at a training base in Beijing from August 26 to August 30, 2015. We investigated the cause of this ARI outbreak.

METHODS

In partnership with the local center for disease control, we collected a total of twelve pharyngeal swab specimens as well as demographic information for the affected patients. We used multiplex real-time PCR to screen for sixteen common respiratory viruses in these samples. To isolate HAdV, we inoculated Hep-2 cells with the human adenovirus (HAdV)-positive samples and then carried out sequencing and phylogenetic analysis of the hexon, fiber, and penton genes of the isolated adenoviruses. In addition, we analyzed the entire genome of one strain isolated from the index case to identify single-nucleotide substitutions.

RESULTS

We identified ten HAdV-positive students using multiplex real-time PCR. None of the students were co-infected with other viruses. We successfully isolated seven HAdV strains from the pharyngeal swab specimens. The coding sequences of the hexon, fiber, and penton genes of these seven HAdV strains were identical, suggesting that they represented seven strains from a single virus clone. One HAdV isolate obtained from the index case, BJDX-01-2015, was selected for whole genome analysis. From this isolate, we obtained a 34,774-nucleotide sequence. The genome of BJDX-01-2015 clustered with HAdV-B55 in phylogenetic analyses and had 99.97% identity with human adenovirus 55 isolate HAdV-B/CHN/BJ01/2011/55 (GenBank accession no. JX491639).

CONCLUSIONS

We identified HAdV-B55 as the strain associated with the August 2015 ARI outbreak at a training base in Beijing. This was the first reported outbreak in Beijing due to HAdV-B55. Continuous surveillance of respiratory adenoviruses is urgently needed to understand the epidemiological and evolutionary features of HAdV-B55, and an epidemiological modeling approach may provide further insights into this emerging public health threat. Furthermore, the clinical laboratory data from this outbreak provides important reference for the clinical diagnosis and may ultimately aid in informing the development of strategies to control and prevent respiratory tract infections caused by HAdV-B55.

摘要

背景

2015 年 8 月 26 日至 8 月 30 日,北京某培训基地 12 名学生出现急性呼吸道感染(ARI)症状。我们对此次 ARI 爆发的原因进行了调查。

方法

我们与当地疾病控制中心合作,共采集了 12 份咽拭子标本以及受影响患者的人口统计学信息。我们使用多重实时 PCR 对这些样本中的 16 种常见呼吸道病毒进行了筛查。为了分离 HAdV,我们用 HAdV 阳性样本接种 Hep-2 细胞,然后对分离的腺病毒的六邻体、纤维和五邻体基因进行测序和系统发育分析。此外,我们对从指数病例中分离出的一株病毒进行了全基因组分析,以鉴定单核苷酸替换。

结果

我们使用多重实时 PCR 鉴定出 10 名 HAdV 阳性学生。所有学生均未与其他病毒混合感染。我们从咽拭子标本中成功分离出 7 株 HAdV 株。这 7 株 HAdV 的六邻体、纤维和五邻体基因编码序列完全相同,表明它们代表同一病毒克隆的 7 个株系。从指数病例中分离出的一株 HAdV 分离株 BJDX-01-2015 用于全基因组分析。从该分离株中,我们获得了 34774 个核苷酸序列。BJDX-01-2015 的基因组在系统发育分析中与 HAdV-B55 聚类,与人类腺病毒 55 分离株 HAdV-B/CHN/BJ01/2011/55(GenBank 登录号 JX491639)的同源性为 99.97%。

结论

我们鉴定出 HAdV-B55 是导致北京某培训基地 2015 年 8 月 ARI 爆发的菌株。这是北京首次报告由 HAdV-B55 引起的爆发。需要对呼吸道腺病毒进行持续监测,以了解 HAdV-B55 的流行病学和进化特征,而流行病学建模方法可能为了解这一新兴的公共卫生威胁提供进一步的见解。此外,该暴发的临床实验室数据为临床诊断提供了重要参考,并最终有助于制定控制和预防由 HAdV-B55 引起的呼吸道感染的策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/993e/7376660/aae8662669ee/12879_2020_5258_Fig1_HTML.jpg

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