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在数据可用性较低时设计药物:一次性学习及应对长期关注问题的其他方法。

Designing drugs when there is low data availability: one-shot learning and other approaches to face the issues of a long-term concern.

作者信息

Veríssimo Gabriel C, Serafim Mateus Sá M, Kronenberger Thales, Ferreira Rafaela S, Honorio Kathia M, Maltarollo Vinícius G

机构信息

Departamento de Produtos Farmacêuticos, Faculdade de Farmácia, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.

Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.

出版信息

Expert Opin Drug Discov. 2022 Sep;17(9):929-947. doi: 10.1080/17460441.2022.2114451. Epub 2022 Aug 30.

Abstract

INTRODUCTION

Modern drug discovery is generally accessed by useful information from previous large databases or uncovering novel data. The lack of biological and/or chemical data tends to slow the development of scientific research and innovation. Here, approaches that may help provide solutions to generate or obtain enough relevant data or improve/accelerate existing methods within the last five years were reviewed.

AREAS COVERED

One-shot learning (OSL) approaches, structural modeling, molecular docking, scoring function space (SFS), molecular dynamics (MD), and quantum mechanics (QM) may be used to amplify the amount of available data to drug design and discovery campaigns, presenting methods, their perspectives, and discussions to be employed in the near future.

EXPERT OPINION

Recent works have successfully used these techniques to solve a range of issues in the face of data scarcity, including complex problems such as the challenging scenario of drug design aimed at intrinsically disordered proteins and the evaluation of potential adverse effects in a clinical scenario. These examples show that it is possible to improve and kickstart research from scarce available data to design and discover new potential drugs.

摘要

引言

现代药物发现通常通过从以前的大型数据库获取有用信息或挖掘新数据来实现。生物和/或化学数据的缺乏往往会减缓科学研究与创新的发展。在此,对过去五年中可能有助于提供解决方案以生成或获取足够相关数据或改进/加速现有方法的途径进行了综述。

涵盖领域

一次性学习(OSL)方法、结构建模、分子对接、评分函数空间(SFS)、分子动力学(MD)和量子力学(QM)可用于扩大药物设计和发现活动中可用数据的数量,介绍了这些方法、它们的前景以及近期将采用的讨论。

专家意见

近期的研究工作已成功运用这些技术来解决数据稀缺情况下的一系列问题,包括诸如针对内在无序蛋白质的具有挑战性的药物设计场景以及临床场景中潜在不良反应评估等复杂问题。这些例子表明,从稀缺的可用数据改进并启动研究以设计和发现新的潜在药物是可行的。

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