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整合空间分辨代谢组学和网络毒理学以探究何首乌成分D的肝毒性机制

Integrated spatially resolved metabolomics and network toxicology to investigate the hepatotoxicity mechanisms of component D of Polygonum multiflorum Thunb.

作者信息

Jiang Hai-Yan, Gao Hui-Yu, Li Jie, Zhou Tian-Yu, Wang Shu-Ting, Yang Jian-Bo, Hao Rui-Rui, Pang Fei, Wei Feng, Liu Zhi-Gang, Kuang Lian, Ma Shuang-Cheng, He Jiu-Ming, Jin Hong-Tao

机构信息

New Drug Safety Evaluation Center, Institute of Materia Medica, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.

Institute for Control of Chinese Traditional Medicine and Ethnic Medicine, National Institutes for Food and Drug Control, Beijing, China.

出版信息

J Ethnopharmacol. 2022 Nov 15;298:115630. doi: 10.1016/j.jep.2022.115630. Epub 2022 Aug 17.

DOI:10.1016/j.jep.2022.115630
PMID:35987407
Abstract

ETHNOPHARMACOLOGICAL RELEVANCE

The liver toxicity of Reynoutria multiflora (Thunb.) Moldenke. (Polygonaceae) (Polygonum multiflorum Thunb, PM) has always attracted much attention, but the related toxicity materials and mechanisms have not been elucidated due to multi-component and multi-target characteristics. In previous hepatotoxicity screening, different components of PM were first evaluated and the hepatotoxicity of component D [95% ethanol (EtOH) elution] in a 70% EtOH extract of PM (PM-D) showed the highest hepatotoxicity. Furthermore, the main components of PM-D were identified and their hepatotoxicity was evaluated based on a zebrafish embryo model. However, the hepatotoxicity mechanism of PM-D is unknown.

AIM OF THE STUDY

This work is to explore the hepatotoxicity mechanisms of PM-D by integrating network toxicology and spatially resolved metabolomics strategy.

MATERIALS AND METHODS

A hepatotoxicity interaction network of PM-D was constructed based on toxicity target prediction for eight key toxic ingredients and a hepatotoxicity target collection. Then the key signaling pathways were enriched, and molecular docking verification was implemented to evaluate the ability of toxic ingredients to bind to the core targets. The pathological changes of liver tissues and serum biochemical assays of mice were used to evaluate the liver injury effect of mice with oral administration of PM-D. Furthermore, spatially resolved metabolomics was used to visualize significant differences in metabolic profiles in mice after drug administration, to screen hepatotoxicity-related biomarkers and analyze metabolic pathways.

RESULTS

The contents of four key toxic compounds in PM-D were detected. Network toxicology identified 30 potential targets of liver toxicity of PM-D. GO and KEGG enrichment analyses indicated that the hepatotoxicity of PM-D involved multiple biological activities, including cellular response to endogenous stimulus, organonitrogen compound metabolic process, regulation of the apoptotic process, regulation of kinase, regulation of reactive oxygen species metabolic process and signaling pathways including PI3K-Akt, AMPK, MAPK, mTOR, Ras and HIF-1. The molecular docking confirmed the high binding activity of 8 key toxic ingredients with 10 core targets, including mTOR, PIK3CA, AKT1, and EGFR. The high distribution of metabolites of PM-D in the liver of administrated mice was recognized by mass spectrometry imaging. Spatially resolved metabolomics results revealed significant changes in metabolic profiles after PM-D administration, and metabolites such as taurine, taurocholic acid, adenosine, and acyl-carnitines were associated with PM-D-induced liver injury. Enrichment analyses of metabolic pathways revealed tht linolenic acid and linoleic acid metabolism, carnitine synthesis, oxidation of branched-chain fatty acids, and six other metabolic pathways were significantly changed. Comprehensive analysis revealed that the hepatotoxicity caused by PM-D was closely related to cholestasis, mitochondrial damage, oxidative stress and energy metabolism, and lipid metabolism disorders.

CONCLUSIONS

In this study, the hepatotoxicity mechanisms of PM-D were comprehensively identified through an integrated spatially resolved metabolomics and network toxicology strategy, providing a theoretical foundation for the toxicity mechanisms of PM and its safe clinical application.

摘要

民族药理学相关性

何首乌(蓼科)(Polygonum multiflorum Thunb,PM)的肝毒性一直备受关注,但由于其多成分、多靶点的特性,相关毒性物质及机制尚未阐明。在之前的肝毒性筛选中,首先对PM的不同成分进行了评估,PM的70%乙醇提取物(PM-D)中成分D(95%乙醇洗脱物)的肝毒性最高。此外,鉴定了PM-D的主要成分,并基于斑马鱼胚胎模型评估了它们的肝毒性。然而,PM-D的肝毒性机制尚不清楚。

研究目的

本研究旨在通过整合网络毒理学和空间分辨代谢组学策略,探索PM-D的肝毒性机制。

材料与方法

基于对8种关键毒性成分的毒性靶点预测和肝毒性靶点集合,构建了PM-D的肝毒性相互作用网络。然后对关键信号通路进行富集,并进行分子对接验证,以评估毒性成分与核心靶点的结合能力。通过小鼠肝组织病理变化和血清生化检测,评估口服PM-D小鼠的肝损伤效应。此外,利用空间分辨代谢组学可视化给药后小鼠代谢谱的显著差异,筛选肝毒性相关生物标志物并分析代谢途径。

结果

检测了PM-D中4种关键毒性化合物的含量。网络毒理学鉴定出PM-D肝毒性的30个潜在靶点。基因本体(GO)和京都基因与基因组百科全书(KEGG)富集分析表明,PM-D的肝毒性涉及多种生物学活性,包括细胞对内源性刺激的反应、有机氮化合物代谢过程、凋亡过程调控、激酶调控、活性氧代谢过程调控以及PI3K-Akt、AMPK、MAPK、mTOR、Ras和HIF-1等信号通路。分子对接证实了8种关键毒性成分与10个核心靶点(包括mTOR、PIK3CA、AKT1和EGFR)具有高结合活性。通过质谱成像识别出PM-D代谢产物在给药小鼠肝脏中的高分布。空间分辨代谢组学结果显示,PM-D给药后代谢谱发生显著变化,牛磺酸、牛磺胆酸、腺苷和酰基肉碱等代谢产物与PM-D诱导的肝损伤有关。代谢途径富集分析显示,亚麻酸和亚油酸代谢、肉碱合成、支链脂肪酸氧化等6条其他代谢途径发生显著变化。综合分析表明,PM-D引起的肝毒性与胆汁淤积、线粒体损伤、氧化应激和能量代谢以及脂质代谢紊乱密切相关。

结论

本研究通过整合空间分辨代谢组学和网络毒理学策略,全面鉴定了PM-D的肝毒性机制,为PM的毒性机制及其安全临床应用提供了理论基础。

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