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转录组学与代谢组学相结合:评估神经节细胞分化后不同细胞的中心代谢。

Transcriptomics Integrated with Metabolomics: Assessing the Central Metabolism of Different Cells after Cell Differentiation in NG.

作者信息

Zeng Nan, Zhang Ning, Ma Xin, Wang Yunjiao, Zhang Yating, Wang Dandan, Pu Fangxiong, Li Bingxue

机构信息

College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, China.

College of Land and Environment, Shenyang Agricultural University, Shenyang 110866, China.

出版信息

J Fungi (Basel). 2022 Aug 22;8(8):882. doi: 10.3390/jof8080882.

Abstract

When organisms are stimulated by external stresses, oxidative stress is induced, resulting in the production of large amounts of reactive oxygen species (ROS) that inhibit cell growth and accelerate cellular aging until death. Understanding the molecular mechanisms of abiotic stress is important to enhance cellular resistance, and , a highly resistant yeast-like fungus, can use cellular differentiation to resist environmental stress. Here, swollen cells (SCs) from two different differentiation periods in NG showed significantly higher antioxidant capacity and stress defense capacity than yeast-like cells (YL). The transcriptome and the metabolome of both cells were analyzed, and the results showed that amino acid metabolism, carbohydrate metabolism, and lipid metabolism were significantly enriched in SCs. Glyoxylate metabolism was significantly upregulated in carbohydrate metabolism, replacing the metabolic hub of the citric acid (TCA) cycle, helping to coordinate multiple metabolic pathways and playing an important role in the resistance of NG to environmental stress. Finally, we obtained 10 key genes and two key metabolites in SCs, which provide valuable clues for subsequent validation. In conclusion, these results provide valuable information for assessing central metabolism-mediating oxidative stress in NG, and also provide new ideas for exploring the pathways of eukaryotic resistance to abiotic stress.

摘要

当生物体受到外部压力刺激时,会诱导氧化应激,导致产生大量抑制细胞生长并加速细胞衰老直至死亡的活性氧(ROS)。了解非生物胁迫的分子机制对于增强细胞抗性很重要,并且,一种高度抗性的类酵母真菌可以利用细胞分化来抵抗环境胁迫。在此,来自NG两个不同分化时期的肿胀细胞(SCs)比类酵母细胞(YL)表现出显著更高的抗氧化能力和应激防御能力。对两种细胞的转录组和代谢组进行了分析,结果表明SCs中氨基酸代谢、碳水化合物代谢和脂质代谢显著富集。在碳水化合物代谢中,乙醛酸代谢显著上调,取代了柠檬酸(TCA)循环的代谢枢纽,有助于协调多种代谢途径,并在NG对环境胁迫的抗性中发挥重要作用。最后,我们在SCs中获得了10个关键基因和两种关键代谢物,为后续验证提供了有价值的线索。总之,这些结果为评估NG中调节氧化应激的中心代谢提供了有价值的信息,也为探索真核生物抗非生物胁迫的途径提供了新的思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cb8/9410427/0f208506c0d5/jof-08-00882-g001.jpg

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