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转录组分析揭示了 在不同 pH 胁迫下的调控机制。

Transcriptome Analysis Reveals the Regulation of under Different pH Stress.

机构信息

School of Life Science and Technology, Harbin Institute of Technology, Harbin 150006, China.

State Key Laboratory of Urban Water Resources and Environment, Harbin Institute of Technology, Harbin 150090, China.

出版信息

Int J Mol Sci. 2023 Nov 9;24(22):16103. doi: 10.3390/ijms242216103.

Abstract

(), a commonly found yeast-like fungus, exhibits adaptability to a wide range of pH environments. However, the specific mechanisms and regulatory pathways through which respond to external pH remain to be fully understood. In this study, we first sequenced the whole genome of using Nanopore technology and generated a circle map. Subsequently, we explored the biomass, pullulan production, melanin production, and polymalic acid production of when cultivated at different pH levels. We selected pH 4.0, pH 7.0, and pH 10.0 to represent acidic, neutral, and alkaline environments, respectively, and examined the morphological characteristics of using SEM and TEM. Our observations revealed that predominantly exhibited hyphal growth with thicker cell walls under acidic conditions. In neutral environments, it primarily displayed thick-walled spores and yeast-like cells, while in alkaline conditions, it mainly assumed an elongated yeast-like cell morphology. Additionally, transcriptome analysis unveiled that orchestrates its response to shifts in environmental pH by modulating its cellular morphology and the expression of genes involved in pullulan, melanin, and polymalic acid synthesis. This research enhances the understanding of how regulates itself in diverse pH settings and offers valuable guidance for developing and applying engineered strains.

摘要

(),一种常见的酵母样真菌,表现出对广泛 pH 环境的适应性。然而,对于如何响应外部 pH 值的具体机制和调控途径仍有待充分理解。在本研究中,我们首先使用纳米孔技术对进行了全基因组测序,并生成了一个环形图谱。随后,我们探索了在不同 pH 值下培养时的生物量、普鲁兰生产、黑色素生产和聚苹果酸生产。我们选择 pH 4.0、pH 7.0 和 pH 10.0 分别代表酸性、中性和碱性环境,并使用 SEM 和 TEM 观察了的形态特征。我们的观察结果表明,在酸性条件下,主要表现为菌丝生长,细胞壁较厚。在中性环境中,它主要表现为厚壁孢子和酵母样细胞,而在碱性条件下,它主要呈现出长形酵母样细胞形态。此外,转录组分析揭示了通过调节细胞形态和参与普鲁兰、黑色素和聚苹果酸合成的基因表达来应对环境 pH 值变化。这项研究增强了对如何在不同 pH 值环境中自我调节的理解,并为开发和应用工程菌株提供了有价值的指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9190/10671783/7653111b927f/ijms-24-16103-g001.jpg

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