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叶提取物成分的计算机模拟和体外筛选以揭示抗菌潜力。

In Silico and In Vitro Screening Constituents of Leaf Extract to Reveal Antimicrobial Potential.

作者信息

Sharma Rahul Kumar, Bibi Shabana, Chopra Hitesh, Khan Muhammad Saad, Aggarwal Navidha, Singh Inderbir, Ahmad Syed Umair, Hasan Mohammad Mehedi, Moustafa Mahmoud, Al-Shehri Mohammed, Alshehri Abdulaziz, Kabra Atul

机构信息

Department of Pharmacology, Amar Shaheed Baba Ajit Singh Jujhar Singh Memorial College of Pharmacy, Bela, Punjab, India.

Department of Biosciences, ShifaTameer-e-Millat University, Islamabad, Pakistan.

出版信息

Evid Based Complement Alternat Med. 2022 Aug 17;2022:3290790. doi: 10.1155/2022/3290790. eCollection 2022.

Abstract

Phytochemicals have been shown to possess multiple bioactives and have been reported to showcase many medicinal effects. A similar kind of evaluation of phytoconstituents for their antimicrobial action has been reported, based on in vitro and in silico data. The goal of the research was to explore bioactive phytoconstituents of leaf for antimicrobial activity. The antimicrobial activity was validated by both molecular docking and antimicrobial assay. Bioactive metabolites were identified using GC-MS. The antimicrobial and antimycobacterial activity of leaves was investigated using the Kirby-Bauer well diffusion method and the rapid culture-MGIT™ DST method against a variety of human pathogens, as well as losis (H37Rv) and bacteria resistant to isoniazid and rifampicin. GC-MS studies confirmed the detection of 17 bioactive constituents. The extract demonstrates the highest antibacterial activity against (sensitive), (sensitive) and methicillin-resistant (MRSA), and susceptible and MRSA (sensitive) with zone of inhibition of 27 mm, 24 mm, and 32 mm respectively. The extract showed no effect on (H37Rv) and bacteria resistant to isoniazid and rifampicin in antimycobacterial activity testing. Molecular docking investigation revealed that three compounds (phthalic acid, isobutyl octadecyl ester, hexadecanoic acid, 1(hydroxymethyl)1,2-ethanediylester, and 2,myristynoyl pantetheine) have generated the best results in terms of binding energies and significant interactions with key residues of target protein 3-hydroxydecanoyl-acyl carrier protein dehydratase (FabA) and confirm its activity as antimicrobial inhibitors. These two-dimensional plots show significant protein-ligand binding interactions (van der Waals interactions, hydrogen bond, alkyl, and Pi-alkyl interactions). ADMET (absorption, distribution, metabolism, excretion, and toxicity) results additionally support the drug-likeness characteristics of concluded potential compounds. The experimental and computational results demonstrated that methanolic extract of leaves had antimicrobial effects for specific infections due to the presence of phytochemical compounds.

摘要

植物化学物质已被证明具有多种生物活性,并据报道具有许多药用功效。基于体外和计算机模拟数据,已有类似的关于植物成分抗菌作用的评估报道。该研究的目的是探索叶片的生物活性植物成分的抗菌活性。通过分子对接和抗菌试验验证了抗菌活性。使用气相色谱 - 质谱联用(GC-MS)鉴定生物活性代谢物。采用 Kirby-Bauer 孔扩散法和快速培养 - MGIT™ DST 法,针对多种人类病原体以及结核分枝杆菌(H37Rv)和对异烟肼及利福平耐药的细菌,研究了叶片的抗菌和抗分枝杆菌活性。GC-MS 研究证实检测到 17 种生物活性成分。该提取物对大肠杆菌(敏感)、金黄色葡萄球菌(敏感)和耐甲氧西林金黄色葡萄球菌(MRSA)表现出最高的抗菌活性,对表皮葡萄球菌敏感株和 MRSA(敏感)的抑菌圈分别为 27 毫米、24 毫米和 32 毫米。在抗分枝杆菌活性测试中,该提取物对结核分枝杆菌(H37Rv)和对异烟肼及利福平耐药的细菌没有作用。分子对接研究表明,三种化合物(邻苯二甲酸异丁基十八烷基酯、十六烷酸 1-(羟甲基)-1,2 - 乙二酯和 2-肉豆蔻酰泛酰硫乙胺)在结合能方面产生了最佳结果,并与靶蛋白 3-羟基癸酰 - 酰基载体蛋白脱水酶(FabA)的关键残基有显著相互作用,证实了它们作为抗菌抑制剂的活性。这些二维图显示了显著的蛋白质 - 配体结合相互作用(范德华相互作用、氢键、烷基和π-烷基相互作用)。药物代谢动力学(ADMET,即吸收、分布、代谢、排泄和毒性)结果进一步支持了所确定的潜在化合物的类药特性。实验和计算结果表明,由于植物化学化合物的存在,叶片的甲醇提取物对特定感染具有抗菌作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/853f/9402321/eba5eb5dbf55/ECAM2022-3290790.001.jpg

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