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源自T细胞炎症特征的顿悟:CD8A作为跨越临床相关性、癌症预后、免疫抑制环境和治疗反应的生物标志物的泛癌特征。

The epiphany derived from T-cell-inflamed profiles: Pan-cancer characterization of CD8A as a biomarker spanning clinical relevance, cancer prognosis, immunosuppressive environment, and treatment responses.

作者信息

Niu Decao, Chen Yifeng, Mi Hua, Mo Zengnan, Pang Guijian

机构信息

Department of Urology, The First Affiliated Hospital of Guangxi Medical University, Nanning, China.

Center for Genomic and Personalized Medicine, Guangxi Key Laboratory for Genomic and Personalized Medicine, Guangxi Collaborative Innovation Center for Genomic and Personalized Medicine, Guangxi Medical University, Nanning, China.

出版信息

Front Genet. 2022 Aug 11;13:974416. doi: 10.3389/fgene.2022.974416. eCollection 2022.

Abstract

CD8A encodes the CD8 alpha chain of αβT cells, which has been proposed as a quantifiable indicator for the assessment of CD8 cytotoxic T lymphocytes (CTLs) recruitment or activity and a robust biomarker for anti-PD-1/PD-L1 therapy responses. Nonetheless, the lack of research into the role of CD8A in tumor microenvironment predisposes to limitations in its clinical utilization. In the presented study, multiple computational tools were used to investigate the roles of CD8A in the pan-cancer study, revealing its essential associations with tumor immune infiltration, immunosuppressive environment formation, cancer progression, and therapy responses. Based on the pan-cancer cohorts of the Cancer Genome Atlas (TCGA) database, our results demonstrated the distinctive CD8A expression patterns in cancer tissues and its close associations with the prognosis and disease stage of cancer. We then found that CD8A was correlated with six major immune cell types, and immunosuppressive cells in multiple cancer types. Besides, epigenetic modifications of CD8A were related to CTL levels and T cell dysfunctional states, thereby affecting survival outcomes of specific cancer types. After that, we explored the co-occurrence patterns of CD8A mutation, thus identifying RMND5A, RNF103-CHMP3, CHMP3, CD8B, MRPL35, MAT2A, RGPD1, RGPD2, REEP1, and ANAPC1P1 genes, which co-occurred mutations with CD8A, and are concomitantly implicated in the regulation of cancer-related pathways. Finally, we tested CD8A as a therapeutic biomarker for multiple antitumor agents' or compounds' responsiveness on various cancer cell lines and cancer cohorts. Our findings denoted the underlying mechanics of CD8A in reflecting the T-cell-inflamed profiles, which has potential as a biomarker in cancer diagnosis, prognosis, and therapeutic responses.

摘要

CD8A编码αβT细胞的CD8α链,它被认为是评估CD8细胞毒性T淋巴细胞(CTL)募集或活性的可量化指标,也是抗PD-1/PD-L1治疗反应的可靠生物标志物。尽管如此,对CD8A在肿瘤微环境中的作用缺乏研究,这使其临床应用存在局限性。在本研究中,使用了多种计算工具来研究CD8A在泛癌研究中的作用,揭示了它与肿瘤免疫浸润、免疫抑制环境形成、癌症进展和治疗反应的重要关联。基于癌症基因组图谱(TCGA)数据库的泛癌队列,我们的结果证明了CD8A在癌组织中的独特表达模式及其与癌症预后和疾病分期的密切关联。然后我们发现CD8A与六种主要免疫细胞类型以及多种癌症类型中的免疫抑制细胞相关。此外,CD8A的表观遗传修饰与CTL水平和T细胞功能失调状态有关,从而影响特定癌症类型的生存结果。之后,我们探索了CD8A突变的共发生模式,从而鉴定出与CD8A共发生突变且同时参与癌症相关通路调控的RMND5A、RNF103-CHMP3、CHMP3、CD8B、MRPL35、MAT2A、RGPD1、RGPD2、REEP1和ANAPC1P1基因。最后,我们测试了CD8A作为多种抗肿瘤药物或化合物对各种癌细胞系和癌症队列反应性的治疗生物标志物。我们的研究结果表明了CD8A在反映T细胞炎症特征方面的潜在机制,它在癌症诊断、预后和治疗反应方面具有作为生物标志物的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af32/9403071/b7a8205e4d76/fgene-13-974416-g001.jpg

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