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计算骨力学生物学的观点:多细胞系统的计算建模。

Perspectives on in silico bone mechanobiology: computational modelling of multicellular systems.

出版信息

Eur Cell Mater. 2022 Aug 30;44:56-73. doi: 10.22203/eCM.v044a04.

Abstract

Bone mechanobiology is the study of the physical, biological and mechanical processes that continuously affect the multiscale multicellular system of the bone from the organ to the molecular scale. Current knowledge derives from experimental studies, which are often limited to gathering qualitative data in a cross-sectional manner, up to a restricted number of time points. Moreover, the simultaneous collection of information about 3D bone microarchitecture, cell activity as well as protein distribution and level is still a challenge. In silico models can expand qualitative information with hypothetical quantitative systems, which allow quantification, testing and comparison to existing quantifiable experimental data. An overview of multiscale, multiphysics, agent-based and hybrid techniques and their applications to bone mechanobiology is provided in the present review. The study analysed how mechanical signals, cells and proteins can be modelled in silico to represent bone remodelling and adaptation. Hybrid modelling of bone mechanobiology could combine the methods used in multiscale, multiphysics and agent-based models into a single model, leading to a unified and comprehensive understanding of bone mechanobiology. Numerical simulations of in vivo multicellular systems aided in hypothesis testing of such in silico models. Recently, in silico trials have been used to illustrate the mechanobiology of cells and signalling pathways in clinical biopsies and animal bones, including the effects of drugs on single cells and signalling pathways up to the organ level. This improved understanding may lead to the identification of novel therapies for degenerative diseases such as osteoporosis.

摘要

骨骼力学是研究物理、生物和机械过程的学科,这些过程不断影响骨骼的多尺度多细胞系统,从器官到分子尺度。目前的知识来源于实验研究,这些研究通常仅限于以横截面的方式收集定性数据,最多只能在有限的时间点进行。此外,同时收集关于 3D 骨微观结构、细胞活性以及蛋白质分布和水平的信息仍然是一个挑战。计算模型可以用假设的定量系统扩展定性信息,从而允许对现有可量化的实验数据进行量化、测试和比较。本文综述了多尺度、多物理、基于代理和混合技术及其在骨骼力学中的应用。研究分析了如何在计算机中对机械信号、细胞和蛋白质进行建模,以代表骨骼重塑和适应。骨骼力学的混合建模可以将多尺度、多物理和基于代理的模型中使用的方法结合到一个单一的模型中,从而对骨骼力学有一个统一和全面的理解。体内多细胞系统的数值模拟有助于对这些计算机模型进行假设检验。最近,计算机模拟已被用于说明临床活检和动物骨骼中细胞和信号通路的力学生物学,包括药物对单个细胞和信号通路的影响,直至器官水平。这种更好的理解可能会导致为骨质疏松症等退行性疾病确定新的治疗方法。

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