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用于评估胰腺导管腺癌分子特征和预后结果的焦亡相关长链非编码RNA对

Pyroptosis-related lncRNA pairs to estimate the molecular features and prognostic outcomes of pancreatic ductal adenocarcinoma.

作者信息

Lu Si-Yuan, Hua Jie, Liu Jiang, Wei Miao-Yan, Liang Chen, Meng Qing-Cai, Zhang Bo, Yu Xian-Jun, Wang Wei, Xu Jin

机构信息

Department of Pancreatic Surgery, Fudan University Shanghai Cancer Center, Shanghai, PR. China; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, PR. China; Shanghai Pancreatic Cancer Institute, Shanghai, PR. China; Pancreatic Cancer Institute, Fudan University, Shanghai, PR. China.

Department of Pancreatic Surgery, Fudan University Shanghai Cancer Center, Shanghai, PR. China; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, PR. China; Shanghai Pancreatic Cancer Institute, Shanghai, PR. China; Pancreatic Cancer Institute, Fudan University, Shanghai, PR. China.

出版信息

Transl Oncol. 2022 Nov;25:101524. doi: 10.1016/j.tranon.2022.101524. Epub 2022 Aug 27.

Abstract

Pyroptosis is a form of programmed cell death associated with inflammatory alterations. However, the intrinsic mechanisms and underlying correlation of pyroptosis-related lncRNAs (PRLs) in pancreatic ductal adenocarcinoma (PDAC) remain unclear. The objective of the current research was to identify pyroptosis-related lncRNAs and a prognostic model to predict the prognosis of patients. We extracted pyroptosis-related lncRNAs to construct a risk model and validated them at Fudan University Shanghai Cancer Center. Crosstalk between lncRNA SNHG10 and GSDMD was found to regulate pyroptosis levels. A new algorithm was used to establish a 0 or 1 PRL pair matrix and prognostic model. Six pyroptosis-related lncRNA pairs were identified and utilized to construct a risk model. The low-risk groups exhibited better prognoses than the high-risk groups. The area under the curve (AUC) indicated extremely high accuracy, reaching 0.810 at 1 year, 0.850 at 2 years, and 0.850 at 3 years in the training set. Patients with different risk scores exhibited distinct metabolic, inflammatory, and immune microenvironments as well as tumor mutation landscapes. Additionally, 9 commonly used chemotherapeutic drugs exhibited different sensitivities between the high- and low-risk groups. To conclude, we propose that pyroptosis exhibits a close correlation with PDAC. Our risk model based on PRL pairs may be beneficial for the accurate estimation of prognostic outcomes, the immune microenvironment, and drug sensitivity, bringing therapeutic hope for patients with PDAC.

摘要

细胞焦亡是一种与炎症改变相关的程序性细胞死亡形式。然而,胰腺导管腺癌(PDAC)中细胞焦亡相关长链非编码RNA(PRLs)的内在机制及其潜在关联仍不清楚。本研究的目的是鉴定细胞焦亡相关长链非编码RNA并建立一个预测模型来预测患者的预后。我们提取了细胞焦亡相关长链非编码RNA以构建风险模型,并在复旦大学附属肿瘤医院进行了验证。发现lncRNA SNHG10与GSDMD之间的相互作用调节细胞焦亡水平。使用一种新算法建立了一个0或1的PRL对矩阵和预后模型。鉴定出6对细胞焦亡相关长链非编码RNA并用于构建风险模型。低风险组的预后优于高风险组。曲线下面积(AUC)显示出极高的准确性,在训练集中1年时为0.810,2年时为0.850,3年时为0.850。不同风险评分的患者表现出不同的代谢、炎症和免疫微环境以及肿瘤突变图谱。此外,9种常用化疗药物在高风险组和低风险组之间表现出不同的敏感性。总之,我们认为细胞焦亡与PDAC密切相关。我们基于PRL对的风险模型可能有助于准确估计预后结果、免疫微环境和药物敏感性,为PDAC患者带来治疗希望。

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