Is it possible to predict signal molecules that are recognized by bacterial receptors?
作者信息
Matilla Miguel A, Monteagudo-Cascales Elizabet, Cerna-Vargas Jean Paul, Gumerov Vadim M, Zhulin Igor B, Krell Tino
机构信息
Department of Environmental Protection, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain.
Departamento de Biotecnología-Biología Vegetal, Universidad Politécnica de Madrid, Madrid, Spain.
出版信息
Environ Microbiol. 2023 Jan;25(1):11-16. doi: 10.1111/1462-2920.16143. Epub 2022 Aug 30.
Abstract
摘要
相似文献
1
Is it possible to predict signal molecules that are recognized by bacterial receptors?是否有可能预测被细菌受体识别的信号分子？
Environ Microbiol. 2023 Jan;25(1):11-16. doi: 10.1111/1462-2920.16143. Epub 2022 Aug 30.
2
Efficient Sampling of Bacterial Signal Transduction for Detection of Pulse-Amplitude Modulated Molecular Signals.用于检测脉冲幅度调制分子信号的细菌信号转导的高效采样
IEEE Trans Biomed Circuits Syst. 2015 Aug;9(4):505-17. doi: 10.1109/TBCAS.2015.2465182. Epub 2015 Sep 11.
3
A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts.细菌中膜结合和细胞内信号转导蛋白普查：细菌的智商、外向者和内向者
BMC Microbiol. 2005 Jun 14;5:35. doi: 10.1186/1471-2180-5-35.
4
The Repertoire of Solute-Binding Proteins of Model Bacteria Reveals Large Differences in Number, Type, and Ligand Range.模式细菌的溶质结合蛋白库揭示了在数量、类型和配体范围方面存在着巨大差异。
Microbiol Spectr. 2022 Oct 26;10(5):e0205422. doi: 10.1128/spectrum.02054-22. Epub 2022 Sep 19.
5
Diffusible signals and interspecies communication in bacteria.细菌中的可扩散信号与种间通讯
Microbiology (Reading). 2008 Jul;154(Pt 7):1845-1858. doi: 10.1099/mic.0.2008/017871-0.
6
Regulation of bacterial virulence by two-component systems.双组分系统对细菌毒力的调控
Curr Opin Microbiol. 2006 Apr;9(2):143-52. doi: 10.1016/j.mib.2006.01.005. Epub 2006 Feb 14.
7
Contrasting signal transduction mechanisms in bacterial and eukaryotic gene transcription.细菌和真核生物基因转录中截然不同的信号转导机制。
FEMS Microbiol Lett. 2006 Aug;261(2):155-64. doi: 10.1111/j.1574-6968.2006.00295.x.
8
Effector proteins of phytopathogenic bacteria: bifunctional signals in virulence and host recognition.植物病原细菌的效应蛋白：毒力和宿主识别中的双功能信号
Curr Opin Microbiol. 2000 Feb;3(1):73-8. doi: 10.1016/s1369-5274(99)00054-5.
9
Bacterial regulatory networks--from self-organizing molecules to cell shape and patterns in bacterial communities.细菌调控网络——从自组织分子到细菌群落中的细胞形态和模式。
EMBO Rep. 2013 Aug;14(8):667-9. doi: 10.1038/embor.2013.93. Epub 2013 Jul 12.
10
Ubiquitous purine sensor modulates diverse signal transduction pathways in bacteria.普遍存在的嘌呤传感器调节细菌中的多种信号转导途径。
Nat Commun. 2024 Jul 12;15(1):5867. doi: 10.1038/s41467-024-50275-3.
引用本文的文献
1
Identification of a dCache-type chemoreceptor in that specifically mediates chemotaxis towards methyl pyruvate.在[具体对象]中鉴定出一种dCache型化学感受器，其特异性介导对丙酮酸钠的趋化作用。
Front Microbiol. 2024 May 9;15:1400284. doi: 10.3389/fmicb.2024.1400284. eCollection 2024.
2
Framework for exploring the sensory repertoire of the human gut microbiota.探索人类肠道微生物组感觉 repertoire 的框架。
mBio. 2024 Jun 12;15(6):e0103924. doi: 10.1128/mbio.01039-24. Epub 2024 May 17.
本文引用的文献
1
ProteInfer, deep neural networks for protein functional inference.蛋白推断，用于蛋白质功能推断的深度神经网络。
Elife. 2023 Feb 27;12:e80942. doi: 10.7554/eLife.80942.
2
Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation.希瓦氏菌属中环状二鸟苷酸代谢和化学感应途径的比较基因组学：新型细菌感应结构域和生活方式调控的功能见解。
mSystems. 2022 Apr 26;7(2):e0151821. doi: 10.1128/msystems.01518-21. Epub 2022 Mar 21.
3
Chemotaxis of the Human Pathogen Pseudomonas aeruginosa to the Neurotransmitter Acetylcholine.人类病原体铜绿假单胞菌向神经递质乙酰胆碱的趋化作用。
mBio. 2022 Apr 26;13(2):e0345821. doi: 10.1128/mbio.03458-21. Epub 2022 Mar 7.
4
Amino acid sensor conserved from bacteria to humans.从细菌到人类都保守的氨基酸传感器。
Proc Natl Acad Sci U S A. 2022 Mar 8;119(10):e2110415119. doi: 10.1073/pnas.2110415119. Epub 2022 Mar 1.
5
Antimicrobial resistance: progress and challenges in antibiotic discovery and anti-infective therapy.抗菌药物耐药性：抗生素发现和抗感染治疗中的进展与挑战。
Microb Biotechnol. 2022 Jan;15(1):70-78. doi: 10.1111/1751-7915.13945. Epub 2021 Oct 5.
6
Prevalence and Specificity of Chemoreceptor Profiles in Plant-Associated Bacteria.植物相关细菌中化学感受器谱的患病率和特异性
mSystems. 2021 Oct 26;6(5):e0095121. doi: 10.1128/mSystems.00951-21. Epub 2021 Sep 21.
7
A catalogue of signal molecules that interact with sensor kinases, chemoreceptors and transcriptional regulators.与传感器激酶、化学感受器和转录调节剂相互作用的信号分子目录。
FEMS Microbiol Rev. 2022 Jan 18;46(1). doi: 10.1093/femsre/fuab043.
8
Highly accurate protein structure prediction with AlphaFold.利用 AlphaFold 进行高精度蛋白质结构预测。
Nature. 2021 Aug;596(7873):583-589. doi: 10.1038/s41586-021-03819-2. Epub 2021 Jul 15.
9
Multiple functions of flagellar motility and chemotaxis in bacterial physiology.鞭毛运动和趋化性的多种功能在细菌生理学中的作用。
FEMS Microbiol Rev. 2021 Nov 23;45(6). doi: 10.1093/femsre/fuab038.
10
The chemoreceptor Tlp10 has a bimodal ligand-binding domain and specificity for multiple classes of chemoeffectors.化学感受器 Tlp10 具有双模态配体结合域和对多种化学效应物的特异性。
Sci Signal. 2021 Jan 5;14(664):eabc8521. doi: 10.1126/scisignal.abc8521.
Zotero 插件