Krahn Natalie, Söll Dieter, Vargas-Rodriguez Oscar
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, United States.
Department of Chemistry, Yale University, New Haven, CT, United States.
Front Physiol. 2022 Aug 19;13:983245. doi: 10.3389/fphys.2022.983245. eCollection 2022.
Intricate evolutionary events enabled the emergence of the full set of aminoacyl-tRNA synthetase (aaRS) families that define the genetic code. The diversification of aaRSs has continued in organisms from all domains of life, yielding aaRSs with unique characteristics as well as aaRS-like proteins with innovative functions outside translation. Recent bioinformatic analyses have revealed the extensive occurrence and phylogenetic diversity of aaRS gene duplication involving every synthetase family. However, only a fraction of these duplicated genes has been characterized, leaving many with biological functions yet to be discovered. Here we discuss how genomic duplication is associated with the occurrence of novel aaRSs and aaRS-like proteins that provide adaptive advantages to their hosts. We illustrate the variety of activities that have evolved from the primordial aaRS catalytic sites. This precedent underscores the need to investigate currently unexplored aaRS genomic duplications as they may hold a key to the discovery of exciting biological processes, new drug targets, important bioactive molecules, and tools for synthetic biology applications.
复杂的进化事件促使全套氨酰-tRNA合成酶(aaRS)家族出现,这些家族定义了遗传密码。aaRS的多样化在生命所有域的生物体中持续存在,产生了具有独特特征的aaRS以及在翻译之外具有创新功能的类aaRS蛋白。最近的生物信息学分析揭示了涉及每个合成酶家族的aaRS基因复制的广泛存在和系统发育多样性。然而,这些复制基因中只有一小部分得到了表征,许多基因的生物学功能还有待发现。在这里,我们讨论基因组复制如何与新型aaRS和类aaRS蛋白的出现相关联,这些蛋白为其宿主提供了适应性优势。我们阐述了从原始aaRS催化位点进化而来的各种活性。这一先例强调了研究目前尚未探索的aaRS基因组复制的必要性,因为它们可能是发现令人兴奋的生物过程、新药物靶点、重要生物活性分子以及合成生物学应用工具的关键。