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甲基硫杆菌项目:一个基于课程的、关于粉红色细菌的微生物学和生物信息学的高中通用研究体验。

Methylothon: a Versatile Course-Based High School Research Experience in Microbiology and Bioinformatics with Pink Bacteria.

作者信息

Jones Peyton A, Frischer David, Mueller Shannon, Le Thomas, Schwanes Anya, Govindaraju Alekhya, Shalvarjian Katie, Leducq Jean-Baptiste, Marx Christopher J, Martinez-Gomez N Cecilia, Lee Jessica A

机构信息

Integrative Biology Program, Harvard University, Cambridge, Massachusetts, USA.

Abraham Lincoln High School, San Francisco, California, USA.

出版信息

J Microbiol Biol Educ. 2022 Aug 1;23(2). doi: 10.1128/jmbe.00227-21. eCollection 2022 Aug.

Abstract

Methylothon is an inquiry-based high school learning module in microbial ecology, molecular biology, and bioinformatics that centers around pink-pigmented plant-associated methylotrophic bacteria. Here, we present an overview of the module's learning goals, describe course resources (available for public use at http://methylothon.com), and relate lessons learned from adapting Methylothon for remote learning during the pandemic in spring of 2021. This curriculum description is intended not only for instructors but also for microbial ecology researchers with an interest in conducting K-12 outreach. The original in-person version of the module allows students to isolate their own strains of methylotrophic bacteria from plants they sample from the environment, to identify these using PCR, sequencing, and phylogenetic analysis, and to contribute their strains to original research in a university lab. The adapted version strengthens the focus on bioinformatics and increases its flexibility and accessibility by making the lab portion optional and adopting free web-based tools. Student feedback and graded assignments from spring 2021 revealed that the lesson was especially effective at introducing the concepts of BLAST and phylogenetic trees and that students valued and felt inspired by the opportunity to conduct hands-on work and to participate in community science.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cca4/9429956/67421d2ee28c/jmbe.00227-21-f001.jpg

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