Jones Peyton A, Frischer David, Mueller Shannon, Le Thomas, Schwanes Anya, Govindaraju Alekhya, Shalvarjian Katie, Leducq Jean-Baptiste, Marx Christopher J, Martinez-Gomez N Cecilia, Lee Jessica A
Integrative Biology Program, Harvard University, Cambridge, Massachusetts, USA.
Abraham Lincoln High School, San Francisco, California, USA.
J Microbiol Biol Educ. 2022 Aug 1;23(2). doi: 10.1128/jmbe.00227-21. eCollection 2022 Aug.
Methylothon is an inquiry-based high school learning module in microbial ecology, molecular biology, and bioinformatics that centers around pink-pigmented plant-associated methylotrophic bacteria. Here, we present an overview of the module's learning goals, describe course resources (available for public use at http://methylothon.com), and relate lessons learned from adapting Methylothon for remote learning during the pandemic in spring of 2021. This curriculum description is intended not only for instructors but also for microbial ecology researchers with an interest in conducting K-12 outreach. The original in-person version of the module allows students to isolate their own strains of methylotrophic bacteria from plants they sample from the environment, to identify these using PCR, sequencing, and phylogenetic analysis, and to contribute their strains to original research in a university lab. The adapted version strengthens the focus on bioinformatics and increases its flexibility and accessibility by making the lab portion optional and adopting free web-based tools. Student feedback and graded assignments from spring 2021 revealed that the lesson was especially effective at introducing the concepts of BLAST and phylogenetic trees and that students valued and felt inspired by the opportunity to conduct hands-on work and to participate in community science.
“甲基营养菌探究”是一个基于探究的高中学习模块,涉及微生物生态学、分子生物学和生物信息学,以粉红色色素沉着的植物相关甲基营养细菌为核心。在此,我们概述该模块的学习目标,描述课程资源(可在http://methylothon.com上供公众使用),并讲述2021年春季疫情期间将“甲基营养菌探究”改编为远程学习课程的经验教训。本课程描述不仅面向教师,也面向有兴趣开展K-12科普活动的微生物生态学研究人员。该模块的原始面授版本允许学生从他们从环境中采集的植物中分离出自己的甲基营养细菌菌株,使用PCR、测序和系统发育分析对这些菌株进行鉴定,并将他们的菌株贡献给大学实验室的原创研究。改编后的版本加强了对生物信息学的关注,并通过使实验部分成为可选内容并采用免费的基于网络的工具,提高了其灵活性和可及性。2021年春季的学生反馈和评分作业显示,该课程在介绍BLAST和系统发育树的概念方面特别有效,学生们重视并受到了进行实践操作和参与社区科学机会的启发。